Hb_011671_050

Information

Type -
Description -
Location Contig11671: 38996-41786
Sequence    

Annotation

kegg
ID rcu:RCOM_1500690
description ubiquitin-protein ligase, putative
nr
ID XP_012090454.1
description PREDICTED: F-box protein At5g07670 [Jatropha curcas]
swissprot
ID Q8VYT5
description F-box protein At5g07670 OS=Arabidopsis thaliana GN=At5g07670 PE=2 SV=1
trembl
ID A0A067JEV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26267 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein at5g07670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05130: 39461-41258 , PASA_asmbl_05131: 39779-40157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_050 0.0 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
2 Hb_000120_340 0.08791752 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_002518_040 0.0884657069 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_001439_050 0.0931591408 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
5 Hb_001511_210 0.096561417 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
6 Hb_003666_070 0.0999501487 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
7 Hb_007632_160 0.1007077584 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001258_130 0.1009485523 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
9 Hb_002374_470 0.1042615216 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
10 Hb_001079_060 0.1052718742 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
11 Hb_002066_100 0.105855906 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
12 Hb_000722_030 0.1066430474 - - putative plant disease resistance family protein [Populus trichocarpa]
13 Hb_002301_120 0.1079769788 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
14 Hb_001053_170 0.1093221834 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
15 Hb_062807_010 0.1093235327 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
16 Hb_001269_060 0.1098183491 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
17 Hb_003101_020 0.110025184 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
18 Hb_000297_210 0.1117329269 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
19 Hb_009486_050 0.1130957158 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_005305_160 0.1142445196 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011671_050 Hb_011671_050 Hb_000120_340 Hb_000120_340 Hb_011671_050--Hb_000120_340 Hb_002518_040 Hb_002518_040 Hb_011671_050--Hb_002518_040 Hb_001439_050 Hb_001439_050 Hb_011671_050--Hb_001439_050 Hb_001511_210 Hb_001511_210 Hb_011671_050--Hb_001511_210 Hb_003666_070 Hb_003666_070 Hb_011671_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_011671_050--Hb_007632_160 Hb_000120_340--Hb_003666_070 Hb_000086_470 Hb_000086_470 Hb_000120_340--Hb_000086_470 Hb_019973_010 Hb_019973_010 Hb_000120_340--Hb_019973_010 Hb_000120_340--Hb_007632_160 Hb_007237_020 Hb_007237_020 Hb_000120_340--Hb_007237_020 Hb_000722_030 Hb_000722_030 Hb_002518_040--Hb_000722_030 Hb_003101_020 Hb_003101_020 Hb_002518_040--Hb_003101_020 Hb_002518_040--Hb_001439_050 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_007313_030 Hb_007313_030 Hb_002518_040--Hb_007313_030 Hb_027684_010 Hb_027684_010 Hb_002518_040--Hb_027684_010 Hb_001439_050--Hb_003101_020 Hb_062807_010 Hb_062807_010 Hb_001439_050--Hb_062807_010 Hb_108576_020 Hb_108576_020 Hb_001439_050--Hb_108576_020 Hb_001439_050--Hb_007313_030 Hb_001511_210--Hb_001258_130 Hb_002301_120 Hb_002301_120 Hb_001511_210--Hb_002301_120 Hb_002066_100 Hb_002066_100 Hb_001511_210--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_001511_210--Hb_016297_010 Hb_001511_210--Hb_000722_030 Hb_002374_470 Hb_002374_470 Hb_001511_210--Hb_002374_470 Hb_005675_050 Hb_005675_050 Hb_003666_070--Hb_005675_050 Hb_168918_010 Hb_168918_010 Hb_003666_070--Hb_168918_010 Hb_004592_010 Hb_004592_010 Hb_003666_070--Hb_004592_010 Hb_003666_070--Hb_007632_160 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_007632_160--Hb_000086_470 Hb_004122_010 Hb_004122_010 Hb_007632_160--Hb_004122_010 Hb_007632_160--Hb_005675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0413518 0.301333 6.17148 3.58472 0.00976631 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0664881 0.0523151 0 0.506377 2.54411

CAGE analysis