Hb_011671_120

Information

Type -
Description -
Location Contig11671: 111395-116137
Sequence    

Annotation

kegg
ID rcu:RCOM_1500880
description DNA binding protein, putative
nr
ID KDP22444.1
description hypothetical protein JCGZ_26275 [Jatropha curcas]
swissprot
ID P25441
description DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC53 PE=1 SV=2
trembl
ID A0A067JSB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05143: 111620-112478 , PASA_asmbl_05144: 113396-115738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_120 0.0 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
2 Hb_001301_280 0.0808125765 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000500_220 0.0925180499 - - PREDICTED: intersectin-1 [Jatropha curcas]
4 Hb_002687_200 0.0999609556 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002486_080 0.1010267029 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
6 Hb_001951_060 0.105867152 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
7 Hb_000375_300 0.1084438251 - - PREDICTED: cyanate hydratase [Jatropha curcas]
8 Hb_000116_560 0.1116315426 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
9 Hb_018845_010 0.1116920781 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
10 Hb_132082_010 0.1118037771 - - hypothetical protein VITISV_030895 [Vitis vinifera]
11 Hb_000157_140 0.1140471881 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_000027_200 0.1147725922 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
13 Hb_007416_070 0.1149515025 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
14 Hb_000007_090 0.1159294253 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
15 Hb_003680_220 0.1175811386 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
16 Hb_001619_060 0.1185514074 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
17 Hb_007537_030 0.120008335 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
18 Hb_002639_030 0.1208550757 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
19 Hb_004218_130 0.1228468084 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
20 Hb_003777_030 0.1231040704 - - Exocyst complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_011671_120 Hb_011671_120 Hb_001301_280 Hb_001301_280 Hb_011671_120--Hb_001301_280 Hb_000500_220 Hb_000500_220 Hb_011671_120--Hb_000500_220 Hb_002687_200 Hb_002687_200 Hb_011671_120--Hb_002687_200 Hb_002486_080 Hb_002486_080 Hb_011671_120--Hb_002486_080 Hb_001951_060 Hb_001951_060 Hb_011671_120--Hb_001951_060 Hb_000375_300 Hb_000375_300 Hb_011671_120--Hb_000375_300 Hb_001301_280--Hb_002486_080 Hb_001301_280--Hb_001951_060 Hb_000365_010 Hb_000365_010 Hb_001301_280--Hb_000365_010 Hb_007416_070 Hb_007416_070 Hb_001301_280--Hb_007416_070 Hb_001619_060 Hb_001619_060 Hb_001301_280--Hb_001619_060 Hb_003680_220 Hb_003680_220 Hb_000500_220--Hb_003680_220 Hb_000926_060 Hb_000926_060 Hb_000500_220--Hb_000926_060 Hb_008725_270 Hb_008725_270 Hb_000500_220--Hb_008725_270 Hb_000500_220--Hb_002687_200 Hb_009296_020 Hb_009296_020 Hb_000500_220--Hb_009296_020 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_002486_080--Hb_001951_060 Hb_002486_080--Hb_007416_070 Hb_000465_150 Hb_000465_150 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_034083_020 Hb_034083_020 Hb_001951_060--Hb_034083_020 Hb_001951_060--Hb_007416_070 Hb_001951_060--Hb_000365_010 Hb_005016_010 Hb_005016_010 Hb_001951_060--Hb_005016_010 Hb_002193_060 Hb_002193_060 Hb_000375_300--Hb_002193_060 Hb_018845_010 Hb_018845_010 Hb_000375_300--Hb_018845_010 Hb_000375_300--Hb_000007_090 Hb_000375_300--Hb_001619_060 Hb_116349_120 Hb_116349_120 Hb_000375_300--Hb_116349_120 Hb_000375_300--Hb_008725_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269641 1.48338 3.01864 3.65369 0.45926 0.994795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.979215 1.31239 0.479845 2.38471 2.61091

CAGE analysis