Hb_011671_240

Information

Type -
Description -
Location Contig11671: 213774-216766
Sequence    

Annotation

kegg
ID rcu:RCOM_1501560
description WD-repeat protein, putative
nr
ID XP_012090497.1
description PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
swissprot
ID Q9JM98
description WD repeat-containing protein WRAP73 OS=Mus musculus GN=Wrap73 PE=2 SV=2
trembl
ID A0A067JI24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26294 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05159: 213786-216567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_240 0.0 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
2 Hb_000451_010 0.0523056708 - - secretory carrier membrane protein, putative [Ricinus communis]
3 Hb_000019_030 0.05878787 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
4 Hb_000618_040 0.0682828022 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
5 Hb_001575_090 0.0718000054 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
6 Hb_004907_080 0.0718152512 - - zinc finger protein, putative [Ricinus communis]
7 Hb_019280_040 0.0730742926 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_032208_090 0.0734730222 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
9 Hb_000120_670 0.074253157 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
10 Hb_004414_060 0.0760348595 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
11 Hb_143629_210 0.0761365782 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
12 Hb_000205_300 0.0763643559 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
13 Hb_006827_020 0.0773968132 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003175_010 0.0778770522 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
15 Hb_000010_330 0.0783813739 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
16 Hb_007059_010 0.0785764849 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
17 Hb_000808_270 0.0796653008 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
18 Hb_007317_110 0.0802640733 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
19 Hb_005357_080 0.0815304501 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
20 Hb_002232_100 0.0817081105 - - vacuolar ATPase F subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_011671_240 Hb_011671_240 Hb_000451_010 Hb_000451_010 Hb_011671_240--Hb_000451_010 Hb_000019_030 Hb_000019_030 Hb_011671_240--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_011671_240--Hb_000618_040 Hb_001575_090 Hb_001575_090 Hb_011671_240--Hb_001575_090 Hb_004907_080 Hb_004907_080 Hb_011671_240--Hb_004907_080 Hb_019280_040 Hb_019280_040 Hb_011671_240--Hb_019280_040 Hb_000451_010--Hb_000618_040 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000019_030--Hb_000618_040 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560 Hb_001575_090--Hb_000468_060 Hb_001575_090--Hb_000120_670 Hb_014834_050 Hb_014834_050 Hb_001575_090--Hb_014834_050 Hb_003918_010 Hb_003918_010 Hb_001575_090--Hb_003918_010 Hb_001009_270 Hb_001009_270 Hb_004907_080--Hb_001009_270 Hb_004907_080--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_004907_080--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_004907_080--Hb_000777_040 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0533 8.16742 14.2543 18.5732 21.5864 25.1953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7777 16.2887 24.3817 15.5893 7.71288

CAGE analysis