Hb_011671_270

Information

Type -
Description -
Location Contig11671: 241175-250681
Sequence    

Annotation

kegg
ID rcu:RCOM_1501790
description phosphofructokinase, putative (EC:2.7.1.90)
nr
ID AIE47272.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q9FKG3
description ATP-dependent 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1
trembl
ID A0A068LJK2
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK3 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05162: 236252-240189 , PASA_asmbl_05166: 242083-250505 , PASA_asmbl_05167: 244162-244525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_270 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_000565_040 0.0772065898 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_000510_340 0.0790714457 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
4 Hb_028960_030 0.0847080008 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
5 Hb_003528_050 0.086021315 - - protein transporter, putative [Ricinus communis]
6 Hb_000352_310 0.0881031881 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
7 Hb_011224_160 0.0883117142 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
8 Hb_007423_050 0.0911008025 - - PREDICTED: cysteine-rich receptor-like protein kinase 3 [Jatropha curcas]
9 Hb_001301_150 0.0925810781 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
10 Hb_004333_040 0.0954962834 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
11 Hb_050847_050 0.0957636304 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
12 Hb_002456_010 0.0961178392 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
13 Hb_000920_300 0.0980894641 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
14 Hb_001878_050 0.0982300026 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
15 Hb_002471_090 0.0985784791 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
16 Hb_000189_600 0.0987274943 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
17 Hb_183510_020 0.0996424411 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_001377_190 0.1002315497 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
19 Hb_008948_020 0.102295163 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
20 Hb_000521_240 0.1024606498 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_270 Hb_011671_270 Hb_000565_040 Hb_000565_040 Hb_011671_270--Hb_000565_040 Hb_000510_340 Hb_000510_340 Hb_011671_270--Hb_000510_340 Hb_028960_030 Hb_028960_030 Hb_011671_270--Hb_028960_030 Hb_003528_050 Hb_003528_050 Hb_011671_270--Hb_003528_050 Hb_000352_310 Hb_000352_310 Hb_011671_270--Hb_000352_310 Hb_011224_160 Hb_011224_160 Hb_011671_270--Hb_011224_160 Hb_003544_060 Hb_003544_060 Hb_000565_040--Hb_003544_060 Hb_001878_050 Hb_001878_050 Hb_000565_040--Hb_001878_050 Hb_000617_230 Hb_000617_230 Hb_000565_040--Hb_000617_230 Hb_000922_360 Hb_000922_360 Hb_000565_040--Hb_000922_360 Hb_002889_020 Hb_002889_020 Hb_000565_040--Hb_002889_020 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_001828_180 Hb_001828_180 Hb_000510_340--Hb_001828_180 Hb_000510_340--Hb_003528_050 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_028960_030--Hb_011224_160 Hb_003683_010 Hb_003683_010 Hb_028960_030--Hb_003683_010 Hb_028960_030--Hb_000979_220 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_021576_010 Hb_021576_010 Hb_028960_030--Hb_021576_010 Hb_003528_050--Hb_000979_220 Hb_027506_010 Hb_027506_010 Hb_003528_050--Hb_027506_010 Hb_011883_020 Hb_011883_020 Hb_003528_050--Hb_011883_020 Hb_000173_190 Hb_000173_190 Hb_003528_050--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_003528_050--Hb_001300_280 Hb_000011_060 Hb_000011_060 Hb_000352_310--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_000352_310--Hb_000189_550 Hb_001876_050 Hb_001876_050 Hb_000352_310--Hb_001876_050 Hb_027073_020 Hb_027073_020 Hb_000352_310--Hb_027073_020 Hb_003465_030 Hb_003465_030 Hb_000352_310--Hb_003465_030 Hb_001301_150 Hb_001301_150 Hb_000352_310--Hb_001301_150 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0177 18.4224 15.6329 11.8334 8.73181 7.57621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.471 12.8485 10.0734 24.0201 19.6168

CAGE analysis