Hb_011671_300

Information

Type -
Description -
Location Contig11671: 263546-264044
Sequence    

Annotation

kegg
ID cit:102627115
description oleosin 1-like
nr
ID AFP19885.1
description 14.3 kDa oleosin [Jatropha curcas]
swissprot
ID P29111
description Major oleosin NAP-II (Fragment) OS=Brassica napus PE=1 SV=1
trembl
ID I7F877
description Oleosin OS=Jatropha curcas GN=Ole14.3 PE=3 SV=1
Gene Ontology
ID GO:0012511
description oleosin 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05171: 263596-264204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_300 0.0 - - 14.3 kDa oleosin [Jatropha curcas]
2 Hb_000120_140 0.0009500068 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
3 Hb_000264_200 0.0012207043 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
4 Hb_008637_010 0.0076959876 - - Major latex protein, putative [Ricinus communis]
5 Hb_001373_120 0.0119792473 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
6 Hb_004712_100 0.0138084162 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
7 Hb_003766_030 0.0163775848 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
8 Hb_001198_070 0.0189903931 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000522_100 0.0233977833 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
10 Hb_002232_330 0.0236064896 - - -
11 Hb_025248_030 0.0252721633 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
12 Hb_005171_030 0.0349640641 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
13 Hb_129319_010 0.0351699412 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
14 Hb_005417_020 0.0353584974 - - -
15 Hb_000629_050 0.0360783549 - - -
16 Hb_011903_030 0.0380379329 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
17 Hb_039385_010 0.0402929305 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_132148_010 0.0419002991 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
19 Hb_000742_050 0.0436322968 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
20 Hb_002582_090 0.0515815692 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]

Gene co-expression network

sample Hb_011671_300 Hb_011671_300 Hb_000120_140 Hb_000120_140 Hb_011671_300--Hb_000120_140 Hb_000264_200 Hb_000264_200 Hb_011671_300--Hb_000264_200 Hb_008637_010 Hb_008637_010 Hb_011671_300--Hb_008637_010 Hb_001373_120 Hb_001373_120 Hb_011671_300--Hb_001373_120 Hb_004712_100 Hb_004712_100 Hb_011671_300--Hb_004712_100 Hb_003766_030 Hb_003766_030 Hb_011671_300--Hb_003766_030 Hb_000120_140--Hb_000264_200 Hb_000120_140--Hb_008637_010 Hb_000120_140--Hb_001373_120 Hb_000120_140--Hb_004712_100 Hb_000120_140--Hb_003766_030 Hb_000264_200--Hb_008637_010 Hb_000264_200--Hb_001373_120 Hb_000264_200--Hb_004712_100 Hb_000264_200--Hb_003766_030 Hb_008637_010--Hb_001373_120 Hb_008637_010--Hb_003766_030 Hb_008637_010--Hb_004712_100 Hb_001373_120--Hb_003766_030 Hb_001373_120--Hb_004712_100 Hb_001198_070 Hb_001198_070 Hb_004712_100--Hb_001198_070 Hb_000522_100 Hb_000522_100 Hb_004712_100--Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_004712_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_004712_100--Hb_025248_030 Hb_132148_010 Hb_132148_010 Hb_003766_030--Hb_132148_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.164754 0.0654674 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis