Hb_011671_310

Information

Type -
Description -
Location Contig11671: 265636-278440
Sequence    

Annotation

kegg
ID rcu:RCOM_1502370
description polycomb protein embryonic flower, putative
nr
ID XP_012090509.1
description PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
swissprot
ID Q8L6Y4
description Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2
trembl
ID A0A067JI33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26304 PE=4 SV=1
Gene Ontology
ID GO:0003677
description polycomb group protein embryonic flower 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05172: 265339-278356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_310 0.0 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
2 Hb_001500_120 0.0759315677 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_005977_030 0.0816573524 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
4 Hb_002311_480 0.0817768965 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
5 Hb_001005_020 0.0876427582 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
6 Hb_001761_120 0.0889771146 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
7 Hb_007290_030 0.0902528095 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
8 Hb_001723_150 0.0924379981 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
9 Hb_001517_050 0.0942834589 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
10 Hb_000089_210 0.0958839188 - - unknown [Medicago truncatula]
11 Hb_000120_250 0.0983536899 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
12 Hb_000352_350 0.0996233194 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
13 Hb_004943_030 0.1017948721 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
14 Hb_002326_110 0.1021572164 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
15 Hb_000951_100 0.1032986896 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
16 Hb_000227_270 0.1048974151 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
17 Hb_003213_010 0.1054763862 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
18 Hb_000086_700 0.1068065891 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
19 Hb_004712_190 0.1080810959 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
20 Hb_002686_080 0.1085110256 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]

Gene co-expression network

sample Hb_011671_310 Hb_011671_310 Hb_001500_120 Hb_001500_120 Hb_011671_310--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_011671_310--Hb_005977_030 Hb_002311_480 Hb_002311_480 Hb_011671_310--Hb_002311_480 Hb_001005_020 Hb_001005_020 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030 Hb_001500_120--Hb_005977_030 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_001500_120--Hb_002311_480 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_000089_210 Hb_000089_210 Hb_005977_030--Hb_000089_210 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_005977_030--Hb_004712_190 Hb_000979_060 Hb_000979_060 Hb_002311_480--Hb_000979_060 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_000579_190 Hb_000579_190 Hb_001005_020--Hb_000579_190 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_001005_020--Hb_007290_030 Hb_170416_010 Hb_170416_010 Hb_001761_120--Hb_170416_010 Hb_003531_080 Hb_003531_080 Hb_001761_120--Hb_003531_080 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340 Hb_007290_030--Hb_000352_350 Hb_001776_060 Hb_001776_060 Hb_007290_030--Hb_001776_060 Hb_000227_270 Hb_000227_270 Hb_007290_030--Hb_000227_270 Hb_000239_060 Hb_000239_060 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09515 6.42031 14.5987 6.41828 3.36089 4.49806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63082 4.46522 5.88484 4.35499 4.0252

CAGE analysis