Hb_011671_330

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig11671: 283476-285967
Sequence    

Annotation

kegg
ID rcu:RCOM_1502380
description hypothetical protein
nr
ID XP_012090770.1
description PREDICTED: protein REVEILLE 4 [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067JSE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26305 PE=4 SV=1
Gene Ontology
ID GO:0003676
description myb-like protein j isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_330 0.0 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
2 Hb_006478_110 0.0883157277 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
3 Hb_000413_130 0.1026711016 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
4 Hb_029866_130 0.1082826194 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
5 Hb_029281_010 0.1091757447 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
6 Hb_001633_110 0.1109759599 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
7 Hb_004931_040 0.1129321756 - - splicing factor-related family protein [Populus trichocarpa]
8 Hb_001817_180 0.1157570979 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
9 Hb_000161_030 0.1200900689 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
10 Hb_002377_050 0.1233672401 - - Agmatine deiminase, putative [Ricinus communis]
11 Hb_000016_110 0.1238453078 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
12 Hb_001514_200 0.1259373311 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
13 Hb_006091_030 0.1287613801 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
14 Hb_000953_140 0.1297011826 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
15 Hb_002675_190 0.1299876604 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_005228_100 0.1300090834 - - -
17 Hb_117950_020 0.1303052793 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
18 Hb_160818_010 0.1304370433 - - -
19 Hb_005314_010 0.1304731118 - - nucleotide binding protein, putative [Ricinus communis]
20 Hb_001454_060 0.130839809 - - uncharacterized protein LOC100527252 [Glycine max]

Gene co-expression network

sample Hb_011671_330 Hb_011671_330 Hb_006478_110 Hb_006478_110 Hb_011671_330--Hb_006478_110 Hb_000413_130 Hb_000413_130 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_029281_010 Hb_029281_010 Hb_011671_330--Hb_029281_010 Hb_001633_110 Hb_001633_110 Hb_011671_330--Hb_001633_110 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_006478_110--Hb_000413_130 Hb_000161_030 Hb_000161_030 Hb_006478_110--Hb_000161_030 Hb_001454_060 Hb_001454_060 Hb_006478_110--Hb_001454_060 Hb_002341_030 Hb_002341_030 Hb_006478_110--Hb_002341_030 Hb_012654_010 Hb_012654_010 Hb_006478_110--Hb_012654_010 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_005314_010 Hb_005314_010 Hb_000413_130--Hb_005314_010 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030 Hb_000152_890 Hb_000152_890 Hb_029866_130--Hb_000152_890 Hb_001057_010 Hb_001057_010 Hb_029866_130--Hb_001057_010 Hb_029866_130--Hb_006478_110 Hb_029866_130--Hb_001454_060 Hb_029866_130--Hb_000413_130 Hb_005214_160 Hb_005214_160 Hb_029866_130--Hb_005214_160 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000953_140 Hb_000953_140 Hb_001633_110--Hb_000953_140 Hb_002377_050 Hb_002377_050 Hb_001633_110--Hb_002377_050 Hb_000208_290 Hb_000208_290 Hb_001633_110--Hb_000208_290 Hb_000027_270 Hb_000027_270 Hb_001633_110--Hb_000027_270 Hb_001433_170 Hb_001433_170 Hb_001633_110--Hb_001433_170 Hb_002675_190 Hb_002675_190 Hb_004931_040--Hb_002675_190 Hb_004931_040--Hb_001439_180 Hb_160818_010 Hb_160818_010 Hb_004931_040--Hb_160818_010 Hb_004931_040--Hb_000953_140 Hb_000331_480 Hb_000331_480 Hb_004931_040--Hb_000331_480 Hb_001034_020 Hb_001034_020 Hb_004931_040--Hb_001034_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94284 1.74768 0.103841 0.072757 5.37433 4.29674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85202 1.53751 2.45566 1.17187 0.248102

CAGE analysis