Hb_011671_340

Information

Type -
Description -
Location Contig11671: 286464-289461
Sequence    

Annotation

kegg
ID rcu:RCOM_1502390
description protein with unknown function (EC:3.1.4.12)
nr
ID AFM30910.1
description small GTPase [Hevea brasiliensis]
swissprot
ID Q05737
description GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
trembl
ID I6QL77
description Small GTPase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05173: 287799-288363 , PASA_asmbl_05174: 287090-287460 , PASA_asmbl_05175: 286479-289309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_340 0.0 - - small GTPase [Hevea brasiliensis]
2 Hb_001155_050 0.0700814797 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
3 Hb_013405_070 0.0914968421 - - ferric-chelate reductase, putative [Ricinus communis]
4 Hb_000800_020 0.0989368696 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
5 Hb_007426_220 0.1078715776 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
6 Hb_003271_040 0.1149246661 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
7 Hb_029253_010 0.1153041105 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
8 Hb_000589_170 0.1184099368 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
9 Hb_012762_040 0.1185418731 - - big map kinase/bmk, putative [Ricinus communis]
10 Hb_000000_480 0.1212955659 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
11 Hb_002249_170 0.1216687277 - - copine, putative [Ricinus communis]
12 Hb_000032_410 0.1231451416 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
13 Hb_015778_040 0.1250836253 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
14 Hb_002281_010 0.1271481823 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
15 Hb_001117_080 0.1287000203 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
16 Hb_006588_190 0.1287196804 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
17 Hb_005511_130 0.1288957534 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
18 Hb_000818_120 0.1291752809 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011381_040 0.1301681869 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
20 Hb_005903_020 0.1319900738 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_011671_340 Hb_011671_340 Hb_001155_050 Hb_001155_050 Hb_011671_340--Hb_001155_050 Hb_013405_070 Hb_013405_070 Hb_011671_340--Hb_013405_070 Hb_000800_020 Hb_000800_020 Hb_011671_340--Hb_000800_020 Hb_007426_220 Hb_007426_220 Hb_011671_340--Hb_007426_220 Hb_003271_040 Hb_003271_040 Hb_011671_340--Hb_003271_040 Hb_029253_010 Hb_029253_010 Hb_011671_340--Hb_029253_010 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_001155_050--Hb_029253_010 Hb_013405_070--Hb_000800_020 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_006588_190 Hb_006588_190 Hb_000800_020--Hb_006588_190 Hb_005511_130 Hb_005511_130 Hb_000800_020--Hb_005511_130 Hb_011381_040 Hb_011381_040 Hb_000800_020--Hb_011381_040 Hb_000984_220 Hb_000984_220 Hb_000800_020--Hb_000984_220 Hb_005903_020 Hb_005903_020 Hb_007426_220--Hb_005903_020 Hb_000620_020 Hb_000620_020 Hb_007426_220--Hb_000620_020 Hb_001511_030 Hb_001511_030 Hb_007426_220--Hb_001511_030 Hb_002871_040 Hb_002871_040 Hb_007426_220--Hb_002871_040 Hb_003271_040--Hb_013405_070 Hb_003271_040--Hb_000800_020 Hb_003835_110 Hb_003835_110 Hb_003271_040--Hb_003835_110 Hb_002205_140 Hb_002205_140 Hb_003271_040--Hb_002205_140 Hb_019654_050 Hb_019654_050 Hb_003271_040--Hb_019654_050 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34315 51.0301 141.751 86.8383 16.5597 11.6216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0582 31.6952 20.9926 32.8098 51.0702

CAGE analysis