Hb_011671_390

Information

Type -
Description -
Location Contig11671: 299234-307566
Sequence    

Annotation

kegg
ID rcu:RCOM_1502430
description methionine sulfoxide reductase, putative (EC:1.8.4.11)
nr
ID NP_001294898.1
description peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
swissprot
ID P54150
description Peptide methionine sulfoxide reductase A4, chloroplastic OS=Arabidopsis thaliana GN=MSR4 PE=1 SV=2
trembl
ID A0A067JEZ7
description Methionine sulfoxide reductase OS=Jatropha curcas GN=JCGZ_26312 PE=2 SV=1
Gene Ontology
ID GO:0008113
description peptide methionine sulfoxide reductase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05176: 299182-307549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_390 0.0 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
2 Hb_004846_090 0.0753685097 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
3 Hb_028487_030 0.0797656899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001616_030 0.0966599398 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
5 Hb_028486_030 0.1061829001 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
6 Hb_002999_050 0.1083574726 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_000069_700 0.1113631634 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
8 Hb_153112_030 0.1126527997 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
9 Hb_001300_040 0.11390334 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
10 Hb_000453_090 0.1149040161 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
11 Hb_000680_140 0.1166308791 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
12 Hb_001633_030 0.1171458326 - - -
13 Hb_003349_080 0.1172362575 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
14 Hb_001218_040 0.1201376542 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
15 Hb_000012_100 0.1201665693 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
16 Hb_003579_030 0.1210877708 - - phosphatase 2C family protein [Populus trichocarpa]
17 Hb_168905_010 0.1247337178 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
18 Hb_000318_160 0.1251936432 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
19 Hb_000224_140 0.1257318866 - - ribonuclease z, chloroplast, putative [Ricinus communis]
20 Hb_001634_040 0.1259048596 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_011671_390 Hb_011671_390 Hb_004846_090 Hb_004846_090 Hb_011671_390--Hb_004846_090 Hb_028487_030 Hb_028487_030 Hb_011671_390--Hb_028487_030 Hb_001616_030 Hb_001616_030 Hb_011671_390--Hb_001616_030 Hb_028486_030 Hb_028486_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_000453_090 Hb_000453_090 Hb_004846_090--Hb_000453_090 Hb_004459_040 Hb_004459_040 Hb_004846_090--Hb_004459_040 Hb_001780_040 Hb_001780_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_004846_090--Hb_028486_030 Hb_028487_030--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_028487_030--Hb_000680_140 Hb_001218_040 Hb_001218_040 Hb_028487_030--Hb_001218_040 Hb_028487_030--Hb_028486_030 Hb_153112_030 Hb_153112_030 Hb_028487_030--Hb_153112_030 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_001616_030--Hb_153112_030 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_026549_040 Hb_026549_040 Hb_028486_030--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_028486_030--Hb_012675_050 Hb_076626_010 Hb_076626_010 Hb_002999_050--Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_002999_050--Hb_010672_070 Hb_002999_050--Hb_003579_030 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_005590_020 Hb_005590_020 Hb_002999_050--Hb_005590_020 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.722 42.1242 93.6109 41.0866 60.2598 49.134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
249.428 331.898 193.436 35.1742 102.612

CAGE analysis