Hb_011671_460

Information

Type -
Description -
Location Contig11671: 349034-363051
Sequence    

Annotation

kegg
ID tcc:TCM_014813
description Ankyrin repeat family protein, putative
nr
ID XP_012090775.1
description PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID A0A061FZS3
description Ankyrin repeat family protein, putative OS=Theobroma cacao GN=TCM_014813 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05193: 351398-351916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_460 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
2 Hb_000934_190 0.0998599213 - - SER/ARG-rich protein 34A [Theobroma cacao]
3 Hb_011671_450 0.10529242 - - -
4 Hb_000096_150 0.1109186583 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000673_020 0.1116691047 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
6 Hb_000125_210 0.1217126227 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
7 Hb_003622_040 0.1219020693 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
8 Hb_015183_060 0.1245120534 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
9 Hb_005098_030 0.1245302064 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
10 Hb_001059_150 0.1248409102 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
11 Hb_008232_010 0.1273460467 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
12 Hb_000982_080 0.1276173861 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
13 Hb_011512_040 0.1278677014 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
14 Hb_003387_070 0.1284362427 - - Acyl-protein thioesterase, putative [Ricinus communis]
15 Hb_008725_170 0.1313570325 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
16 Hb_000820_090 0.1318324569 - - -
17 Hb_019113_020 0.1341024414 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
18 Hb_001892_070 0.1370454339 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_027654_050 0.1378449435 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
20 Hb_000853_190 0.1381196072 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011671_460 Hb_011671_460 Hb_000934_190 Hb_000934_190 Hb_011671_460--Hb_000934_190 Hb_011671_450 Hb_011671_450 Hb_011671_460--Hb_011671_450 Hb_000096_150 Hb_000096_150 Hb_011671_460--Hb_000096_150 Hb_000673_020 Hb_000673_020 Hb_011671_460--Hb_000673_020 Hb_000125_210 Hb_000125_210 Hb_011671_460--Hb_000125_210 Hb_003622_040 Hb_003622_040 Hb_011671_460--Hb_003622_040 Hb_000934_190--Hb_003622_040 Hb_000934_190--Hb_000673_020 Hb_005098_030 Hb_005098_030 Hb_000934_190--Hb_005098_030 Hb_008232_010 Hb_008232_010 Hb_000934_190--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000934_190--Hb_000982_080 Hb_003462_120 Hb_003462_120 Hb_000934_190--Hb_003462_120 Hb_000922_390 Hb_000922_390 Hb_011671_450--Hb_000922_390 Hb_011671_450--Hb_005098_030 Hb_000820_090 Hb_000820_090 Hb_011671_450--Hb_000820_090 Hb_004679_050 Hb_004679_050 Hb_011671_450--Hb_004679_050 Hb_001811_030 Hb_001811_030 Hb_011671_450--Hb_001811_030 Hb_000056_250 Hb_000056_250 Hb_000096_150--Hb_000056_250 Hb_000096_150--Hb_000125_210 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000318_160 Hb_000318_160 Hb_000096_150--Hb_000318_160 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120 Hb_013405_140 Hb_013405_140 Hb_000673_020--Hb_013405_140 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_002016_080 Hb_002016_080 Hb_000673_020--Hb_002016_080 Hb_000125_210--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000125_210--Hb_161175_010 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000125_210--Hb_000175_030 Hb_001123_160 Hb_001123_160 Hb_003622_040--Hb_001123_160 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000300_430 Hb_000300_430 Hb_003622_040--Hb_000300_430 Hb_003622_040--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_003622_040--Hb_011344_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142639 0.110142 0.383262 0.44768 0.280057 0.157695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.677973 0.75057 1.1281 0.544555 0.600269

CAGE analysis