Hb_011674_020

Information

Type -
Description -
Location Contig11674: 11083-22207
Sequence    

Annotation

kegg
ID rcu:RCOM_0487930
description NEDD8-activating enzyme E1 regulatory subunit, putative
nr
ID XP_012075110.1
description PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
swissprot
ID P42744
description NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1
trembl
ID A0A067KGX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10346 PE=4 SV=1
Gene Ontology
ID GO:0019781
description nedd8-activating enzyme e1 regulatory subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05199: 12130-22279 , PASA_asmbl_05200: 13688-22101 , PASA_asmbl_05201: 15167-15509
cDNA
(Sanger)
(ID:Location)		 015_N18.ab1: 18344-21632

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011674_020 0.0 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
2 Hb_013726_090 0.068812174 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
3 Hb_001571_050 0.0714157465 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
4 Hb_007380_060 0.0715956556 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
5 Hb_000111_320 0.0721013168 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
6 Hb_001876_050 0.0731598858 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
7 Hb_001999_310 0.0734089548 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
8 Hb_000053_040 0.0739635388 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
9 Hb_179306_020 0.0748939989 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
10 Hb_000138_100 0.0758171997 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
11 Hb_002968_080 0.0773448208 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
12 Hb_002600_150 0.0781018866 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
13 Hb_001301_150 0.0789745193 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
14 Hb_005357_160 0.0793237045 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
15 Hb_000011_060 0.0793298041 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
16 Hb_000110_190 0.0799751291 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_019616_020 0.0808643732 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
18 Hb_007416_120 0.0810438755 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
19 Hb_000981_030 0.0828048414 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
20 Hb_001860_030 0.0843393077 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_011674_020 Hb_011674_020 Hb_013726_090 Hb_013726_090 Hb_011674_020--Hb_013726_090 Hb_001571_050 Hb_001571_050 Hb_011674_020--Hb_001571_050 Hb_007380_060 Hb_007380_060 Hb_011674_020--Hb_007380_060 Hb_000111_320 Hb_000111_320 Hb_011674_020--Hb_000111_320 Hb_001876_050 Hb_001876_050 Hb_011674_020--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_011674_020--Hb_001999_310 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010 Hb_002965_090 Hb_002965_090 Hb_001571_050--Hb_002965_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_004109_310 Hb_004109_310 Hb_001571_050--Hb_004109_310 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_012733_030 Hb_012733_030 Hb_007380_060--Hb_012733_030 Hb_007380_060--Hb_002600_150 Hb_007380_060--Hb_001999_310 Hb_168978_030 Hb_168978_030 Hb_007380_060--Hb_168978_030 Hb_007380_060--Hb_013726_090 Hb_000392_430 Hb_000392_430 Hb_000111_320--Hb_000392_430 Hb_000466_140 Hb_000466_140 Hb_000111_320--Hb_000466_140 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000111_320--Hb_000138_100 Hb_002811_180 Hb_002811_180 Hb_000111_320--Hb_002811_180 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88888 10.3123 10.3249 15.0194 9.65442 16.5586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6281 10.5183 11.1172 22.8691 15.1546

CAGE analysis