Hb_011689_010

Information

Type -
Description -
Location Contig11689: 9546-10568
Sequence    

Annotation

kegg
ID rcu:RCOM_0678720
description s-adenosylmethionine decarboxylase, putative (EC:4.1.1.50)
nr
ID XP_012069469.1
description PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
swissprot
ID Q3E9D5
description S-adenosylmethionine decarboxylase proenzyme 4 OS=Arabidopsis thaliana GN=SAMDC4 PE=1 SV=1
trembl
ID A0A067KV87
description S-adenosylmethionine decarboxylase proenzyme OS=Jatropha curcas GN=JCGZ_02065 PE=3 SV=1
Gene Ontology
ID GO:0004014
description s-adenosylmethionine decarboxylase proenzyme 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05224: 10510-10638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_010 0.0 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
2 Hb_166360_010 0.0828876448 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
3 Hb_004218_270 0.0879013465 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
4 Hb_005532_080 0.0893106859 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
5 Hb_162450_010 0.0905639352 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
6 Hb_093084_030 0.0915268919 - - oleosin2 [Plukenetia volubilis]
7 Hb_011549_040 0.0919288278 - - -
8 Hb_068804_190 0.0938721757 - - kinase, putative [Ricinus communis]
9 Hb_007113_060 0.0942350195 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
10 Hb_000933_030 0.097472097 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
11 Hb_007382_110 0.1081421243 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
12 Hb_000816_140 0.1109394492 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
13 Hb_185608_010 0.1127137071 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
14 Hb_049955_010 0.1165328729 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
15 Hb_057862_010 0.1171919965 - - protein binding protein, putative [Ricinus communis]
16 Hb_056506_040 0.118043707 - - -
17 Hb_005269_060 0.1204170736 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
18 Hb_006922_120 0.1216039668 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
19 Hb_005440_040 0.1235195718 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
20 Hb_006977_010 0.1245673028 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_011689_010 Hb_011689_010 Hb_166360_010 Hb_166360_010 Hb_011689_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_011689_010--Hb_004218_270 Hb_005532_080 Hb_005532_080 Hb_011689_010--Hb_005532_080 Hb_162450_010 Hb_162450_010 Hb_011689_010--Hb_162450_010 Hb_093084_030 Hb_093084_030 Hb_011689_010--Hb_093084_030 Hb_011549_040 Hb_011549_040 Hb_011689_010--Hb_011549_040 Hb_166360_010--Hb_005532_080 Hb_068804_190 Hb_068804_190 Hb_166360_010--Hb_068804_190 Hb_166360_010--Hb_011549_040 Hb_166360_010--Hb_162450_010 Hb_166360_010--Hb_004218_270 Hb_000933_030 Hb_000933_030 Hb_166360_010--Hb_000933_030 Hb_004218_270--Hb_093084_030 Hb_004218_270--Hb_162450_010 Hb_004218_270--Hb_000933_030 Hb_004218_270--Hb_011549_040 Hb_004218_270--Hb_005532_080 Hb_005532_080--Hb_068804_190 Hb_005532_080--Hb_011549_040 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_056506_040 Hb_056506_040 Hb_005532_080--Hb_056506_040 Hb_005532_080--Hb_162450_010 Hb_162450_010--Hb_093084_030 Hb_057862_010 Hb_057862_010 Hb_162450_010--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_162450_010--Hb_185608_010 Hb_093084_030--Hb_166360_010 Hb_181908_010 Hb_181908_010 Hb_093084_030--Hb_181908_010 Hb_093084_030--Hb_185608_010 Hb_093084_030--Hb_005532_080 Hb_011549_040--Hb_068804_190 Hb_011549_040--Hb_000933_030 Hb_011549_040--Hb_056506_040 Hb_010577_020 Hb_010577_020 Hb_011549_040--Hb_010577_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0537902 0 0.750689 2.23023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.03214

CAGE analysis