Hb_011689_020

Information

Type -
Description -
Location Contig11689: 23619-27584
Sequence    

Annotation

kegg
ID rcu:RCOM_0678830
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002516819.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q7XJ53
description Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana GN=At3g06270 PE=2 SV=1
trembl
ID B9RSV0
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0678830 PE=3 SV=1
Gene Ontology
ID GO:0005886
description probable protein phosphatase 2c 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05225: 23724-27528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_020 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_005839_060 0.0857646728 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
3 Hb_002805_070 0.0879265567 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
4 Hb_000703_220 0.0905129288 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
5 Hb_000284_110 0.0905300127 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
6 Hb_000166_110 0.0964763801 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
7 Hb_005679_050 0.0991899518 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_001266_080 0.1001793678 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
9 Hb_006921_030 0.1003456076 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
10 Hb_032458_010 0.1052143178 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
11 Hb_006157_020 0.1061707385 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
12 Hb_004204_020 0.1087382548 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
13 Hb_001691_120 0.1107586006 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
14 Hb_002271_030 0.111245209 - - Vacuolar protein sorting protein, putative [Ricinus communis]
15 Hb_000321_070 0.1119365826 - - protein with unknown function [Ricinus communis]
16 Hb_001638_170 0.1119673602 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
17 Hb_000808_230 0.1121458603 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
18 Hb_004619_050 0.112722156 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
19 Hb_007426_030 0.1133917691 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
20 Hb_005883_050 0.1144792153 - - PREDICTED: transportin-3 [Jatropha curcas]

Gene co-expression network

sample Hb_011689_020 Hb_011689_020 Hb_005839_060 Hb_005839_060 Hb_011689_020--Hb_005839_060 Hb_002805_070 Hb_002805_070 Hb_011689_020--Hb_002805_070 Hb_000703_220 Hb_000703_220 Hb_011689_020--Hb_000703_220 Hb_000284_110 Hb_000284_110 Hb_011689_020--Hb_000284_110 Hb_000166_110 Hb_000166_110 Hb_011689_020--Hb_000166_110 Hb_005679_050 Hb_005679_050 Hb_011689_020--Hb_005679_050 Hb_005839_060--Hb_000703_220 Hb_005839_060--Hb_000166_110 Hb_004204_020 Hb_004204_020 Hb_005839_060--Hb_004204_020 Hb_009133_010 Hb_009133_010 Hb_005839_060--Hb_009133_010 Hb_003673_060 Hb_003673_060 Hb_005839_060--Hb_003673_060 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_039253_010 Hb_039253_010 Hb_002805_070--Hb_039253_010 Hb_001102_150 Hb_001102_150 Hb_002805_070--Hb_001102_150 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_000703_220--Hb_004204_020 Hb_000703_220--Hb_009133_010 Hb_000703_220--Hb_000166_110 Hb_004370_030 Hb_004370_030 Hb_000703_220--Hb_004370_030 Hb_024714_100 Hb_024714_100 Hb_000284_110--Hb_024714_100 Hb_000045_090 Hb_000045_090 Hb_000284_110--Hb_000045_090 Hb_002616_050 Hb_002616_050 Hb_000284_110--Hb_002616_050 Hb_000395_170 Hb_000395_170 Hb_000284_110--Hb_000395_170 Hb_000284_110--Hb_000166_110 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001700_040 Hb_001700_040 Hb_005679_050--Hb_001700_040 Hb_001617_060 Hb_001617_060 Hb_005679_050--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_005679_050--Hb_003966_030 Hb_067345_010 Hb_067345_010 Hb_005679_050--Hb_067345_010 Hb_001691_120 Hb_001691_120 Hb_005679_050--Hb_001691_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2699 7.53909 7.14772 12.2477 15.1494 39.0241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3542 17.3653 21.3234 24.3797 13.4062

CAGE analysis