Hb_011689_040

Information

Type -
Description -
Location Contig11689: 41880-43765
Sequence    

Annotation

kegg
ID pmum:103322880
description peptide methionine sulfoxide reductase B5-like
nr
ID XP_012069464.1
description PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
swissprot
ID Q10L32
description Peptide methionine sulfoxide reductase B5 OS=Oryza sativa subsp. japonica GN=MSRB5 PE=2 SV=1
trembl
ID A0A067L7J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02062 PE=4 SV=1
Gene Ontology
ID GO:0008113
description peptide methionine sulfoxide reductase b5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05232: 43445-43722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_040 0.0 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
2 Hb_005215_030 0.0854543997 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
3 Hb_000522_080 0.098825516 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
4 Hb_000162_170 0.1100323868 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
5 Hb_000696_340 0.1109760885 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
6 Hb_000395_080 0.1122771133 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
7 Hb_004242_080 0.1127375826 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
8 Hb_000221_210 0.1136191781 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
9 Hb_000638_080 0.1173030255 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
10 Hb_000923_050 0.1262531079 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
11 Hb_001221_410 0.1267877624 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
12 Hb_005539_030 0.127840214 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
13 Hb_000483_360 0.1292942096 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
14 Hb_002137_020 0.1309036328 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_002333_080 0.1321832027 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
16 Hb_000877_060 0.132487402 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
17 Hb_011828_020 0.1325008242 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
18 Hb_007254_040 0.1327251085 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
19 Hb_000174_070 0.1327640288 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
20 Hb_001472_120 0.1341962681 - - -

Gene co-expression network

sample Hb_011689_040 Hb_011689_040 Hb_005215_030 Hb_005215_030 Hb_011689_040--Hb_005215_030 Hb_000522_080 Hb_000522_080 Hb_011689_040--Hb_000522_080 Hb_000162_170 Hb_000162_170 Hb_011689_040--Hb_000162_170 Hb_000696_340 Hb_000696_340 Hb_011689_040--Hb_000696_340 Hb_000395_080 Hb_000395_080 Hb_011689_040--Hb_000395_080 Hb_004242_080 Hb_004242_080 Hb_011689_040--Hb_004242_080 Hb_000483_360 Hb_000483_360 Hb_005215_030--Hb_000483_360 Hb_005215_030--Hb_000395_080 Hb_005539_030 Hb_005539_030 Hb_005215_030--Hb_005539_030 Hb_000556_020 Hb_000556_020 Hb_005215_030--Hb_000556_020 Hb_003728_030 Hb_003728_030 Hb_005215_030--Hb_003728_030 Hb_000522_080--Hb_004242_080 Hb_001722_100 Hb_001722_100 Hb_000522_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_000522_080--Hb_021650_030 Hb_014720_080 Hb_014720_080 Hb_000522_080--Hb_014720_080 Hb_000091_090 Hb_000091_090 Hb_000522_080--Hb_000091_090 Hb_004223_280 Hb_004223_280 Hb_000522_080--Hb_004223_280 Hb_000500_090 Hb_000500_090 Hb_000162_170--Hb_000500_090 Hb_000162_170--Hb_005215_030 Hb_007254_040 Hb_007254_040 Hb_000162_170--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_000162_170--Hb_011310_190 Hb_001221_410 Hb_001221_410 Hb_000162_170--Hb_001221_410 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_005329_020 Hb_005329_020 Hb_000696_340--Hb_005329_020 Hb_000329_630 Hb_000329_630 Hb_000696_340--Hb_000329_630 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_011828_020 Hb_011828_020 Hb_000395_080--Hb_011828_020 Hb_000877_060 Hb_000877_060 Hb_000395_080--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_000395_080--Hb_001477_130 Hb_000395_080--Hb_000696_340 Hb_000395_080--Hb_002137_020 Hb_000163_200 Hb_000163_200 Hb_004242_080--Hb_000163_200 Hb_034350_010 Hb_034350_010 Hb_004242_080--Hb_034350_010 Hb_004242_080--Hb_001221_410 Hb_000987_120 Hb_000987_120 Hb_004242_080--Hb_000987_120 Hb_070986_010 Hb_070986_010 Hb_004242_080--Hb_070986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6204 11.3164 2.11334 6.6808 18.5323 12.3842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.6397 15.9995 14.8804 15.0606 2.66736

CAGE analysis