Hb_011689_050

Information

Type -
Description -
Location Contig11689: 45255-46097
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20290g
description POPTRDRAFT_766776; hypothetical protein
nr
ID XP_002311817.1
description hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HM97
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05233: 45323-46062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_050 0.0 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
2 Hb_000963_030 0.0816526416 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
3 Hb_004958_050 0.0930745082 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
4 Hb_001616_020 0.0946987591 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
5 Hb_001123_120 0.0950606186 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
6 Hb_000161_050 0.0981152591 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000144_110 0.1037480585 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
8 Hb_002781_020 0.1041109183 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
9 Hb_000696_220 0.111213667 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
10 Hb_002326_180 0.1154455063 - - Protein Z, putative [Ricinus communis]
11 Hb_001045_080 0.1158885552 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
12 Hb_009252_130 0.1167183761 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
13 Hb_017862_010 0.116816211 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
14 Hb_007943_140 0.1182767167 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
15 Hb_005590_020 0.119347363 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
16 Hb_034585_040 0.1196180822 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
17 Hb_007575_070 0.1200778564 - - Histone H3.2 [Glycine soja]
18 Hb_000085_330 0.1203757157 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
19 Hb_009851_100 0.1214336768 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
20 Hb_004109_020 0.1218448531 - - 60S ribosomal protein L18aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_011689_050 Hb_011689_050 Hb_000963_030 Hb_000963_030 Hb_011689_050--Hb_000963_030 Hb_004958_050 Hb_004958_050 Hb_011689_050--Hb_004958_050 Hb_001616_020 Hb_001616_020 Hb_011689_050--Hb_001616_020 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000161_050 Hb_000161_050 Hb_011689_050--Hb_000161_050 Hb_000144_110 Hb_000144_110 Hb_011689_050--Hb_000144_110 Hb_007943_140 Hb_007943_140 Hb_000963_030--Hb_007943_140 Hb_000172_420 Hb_000172_420 Hb_000963_030--Hb_000172_420 Hb_002248_100 Hb_002248_100 Hb_000963_030--Hb_002248_100 Hb_026398_010 Hb_026398_010 Hb_000963_030--Hb_026398_010 Hb_000805_130 Hb_000805_130 Hb_000963_030--Hb_000805_130 Hb_002234_210 Hb_002234_210 Hb_004958_050--Hb_002234_210 Hb_004958_050--Hb_001616_020 Hb_000634_050 Hb_000634_050 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080 Hb_009252_130 Hb_009252_130 Hb_001616_020--Hb_009252_130 Hb_001616_020--Hb_002234_210 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_000161_050--Hb_002781_020 Hb_001153_080 Hb_001153_080 Hb_000161_050--Hb_001153_080 Hb_000212_260 Hb_000212_260 Hb_000161_050--Hb_000212_260 Hb_000161_050--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000161_050--Hb_009851_100 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_000144_110--Hb_009252_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7284 4.95858 5.74062 5.86323 19.4365 20.4962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.2683 109.608 29.5811 11.3234 3.71667

CAGE analysis