Hb_011689_080

Information

Type -
Description -
Location Contig11689: 69519-72374
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20270g
description POPTRDRAFT_820907; tRNA/rRNA methyltransferase family protein
nr
ID XP_012069459.1
description PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
swissprot
ID P94538
description Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) GN=ysgA PE=3 SV=2
trembl
ID A0A067L6D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02058 PE=4 SV=1
Gene Ontology
ID GO:0005622
description rrna methyltransferase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05238: 66551-68931 , PASA_asmbl_05239: 69709-72301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_080 0.0 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
2 Hb_000398_180 0.0540013109 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
3 Hb_003058_130 0.0578954661 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
4 Hb_003392_040 0.0579142282 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
5 Hb_004324_310 0.0579605931 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003001_120 0.059300311 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
7 Hb_001377_290 0.0598648988 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
8 Hb_000926_280 0.060195303 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
9 Hb_118707_030 0.060921264 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
10 Hb_002685_140 0.0641800218 - - PREDICTED: membrin-11 [Jatropha curcas]
11 Hb_005539_350 0.0648453019 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000103_560 0.0655623976 - - ADP-ribosylation factor, putative [Ricinus communis]
13 Hb_000661_250 0.0657944011 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
14 Hb_063716_050 0.0664538467 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
15 Hb_005993_040 0.0683776642 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
16 Hb_000327_120 0.0693251384 - - FGFR1 oncogene partner, putative [Ricinus communis]
17 Hb_007218_080 0.070803556 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
18 Hb_001635_170 0.0709964631 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
19 Hb_000720_120 0.0710655112 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
20 Hb_003929_160 0.0714054062 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_011689_080 Hb_011689_080 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_001377_290 Hb_001377_290 Hb_011689_080--Hb_001377_290 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_003058_130--Hb_003392_040 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_000103_560 Hb_000103_560 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_039837_010 Hb_039837_010 Hb_003058_130--Hb_039837_010 Hb_000169_010 Hb_000169_010 Hb_003392_040--Hb_000169_010 Hb_000032_570 Hb_000032_570 Hb_003392_040--Hb_000032_570 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_002105_090 Hb_002105_090 Hb_004324_310--Hb_002105_090 Hb_004324_310--Hb_001377_290 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_001377_290--Hb_004195_160 Hb_001377_290--Hb_002078_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7156 6.87081 8.41624 7.33119 15.2391 19.0062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6226 18.522 14.9901 8.08868 4.9584

CAGE analysis