Hb_011689_140

Information

Type -
Description -
Location Contig11689: 97293-105539
Sequence    

Annotation

kegg
ID gmx:100818794
description uncharacterized LOC100818794
nr
ID XP_012069451.1
description PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
swissprot
ID Q8LAN3
description Probable prolyl 4-hydroxylase 4 OS=Arabidopsis thaliana GN=P4H4 PE=2 SV=1
trembl
ID A0A067L7I1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02052 PE=4 SV=1
Gene Ontology
ID GO:0016705
description probable prolyl 4-hydroxylase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_140 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
2 Hb_000625_110 0.2255920082 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
3 Hb_000111_300 0.2408215378 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
4 Hb_002417_030 0.2425126907 - - PREDICTED: purine permease 3-like [Jatropha curcas]
5 Hb_038758_010 0.242692874 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_000142_020 0.2592780885 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_005426_010 0.2604692161 - - polyprotein [Oryza australiensis]
8 Hb_007592_010 0.2604704054 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
9 Hb_008092_010 0.2604957858 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
10 Hb_003702_020 0.2605030876 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
11 Hb_000370_050 0.2605037026 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_002342_040 0.2605847394 - - FERONIA, partial [Arabis alpina]
13 Hb_042239_010 0.260610681 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
14 Hb_048653_010 0.260654732 - - PREDICTED: mavicyanin [Jatropha curcas]
15 Hb_013654_020 0.2606600518 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
16 Hb_008221_010 0.2608204882 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
17 Hb_122911_010 0.2608910981 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
18 Hb_008953_020 0.2611124318 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
19 Hb_000135_040 0.2611255647 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
20 Hb_000045_270 0.2612634258 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011689_140 Hb_011689_140 Hb_000625_110 Hb_000625_110 Hb_011689_140--Hb_000625_110 Hb_000111_300 Hb_000111_300 Hb_011689_140--Hb_000111_300 Hb_002417_030 Hb_002417_030 Hb_011689_140--Hb_002417_030 Hb_038758_010 Hb_038758_010 Hb_011689_140--Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_011689_140--Hb_000142_020 Hb_005426_010 Hb_005426_010 Hb_011689_140--Hb_005426_010 Hb_000625_110--Hb_002417_030 Hb_000625_110--Hb_038758_010 Hb_000625_110--Hb_000142_020 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_002301_200 Hb_002301_200 Hb_000111_300--Hb_002301_200 Hb_000417_290 Hb_000417_290 Hb_000111_300--Hb_000417_290 Hb_001863_100 Hb_001863_100 Hb_000111_300--Hb_001863_100 Hb_000111_300--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000111_300--Hb_002217_440 Hb_008616_060 Hb_008616_060 Hb_000111_300--Hb_008616_060 Hb_012055_100 Hb_012055_100 Hb_002417_030--Hb_012055_100 Hb_002417_030--Hb_006198_170 Hb_002417_030--Hb_038758_010 Hb_000877_090 Hb_000877_090 Hb_002417_030--Hb_000877_090 Hb_002417_030--Hb_000142_020 Hb_038758_010--Hb_000142_020 Hb_038758_010--Hb_000877_090 Hb_038758_010--Hb_002217_440 Hb_001810_010 Hb_001810_010 Hb_038758_010--Hb_001810_010 Hb_038758_010--Hb_012055_100 Hb_000142_020--Hb_002217_440 Hb_000142_020--Hb_000877_090 Hb_004488_010 Hb_004488_010 Hb_000142_020--Hb_004488_010 Hb_000142_020--Hb_001810_010 Hb_007592_010 Hb_007592_010 Hb_005426_010--Hb_007592_010 Hb_008092_010 Hb_008092_010 Hb_005426_010--Hb_008092_010 Hb_003702_020 Hb_003702_020 Hb_005426_010--Hb_003702_020 Hb_000370_050 Hb_000370_050 Hb_005426_010--Hb_000370_050 Hb_042239_010 Hb_042239_010 Hb_005426_010--Hb_042239_010 Hb_048653_010 Hb_048653_010 Hb_005426_010--Hb_048653_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206222 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0436601 0 0.0879523 0

CAGE analysis