Hb_011716_010

Information

Type -
Description -
Location Contig11716: 7075-10818
Sequence    

Annotation

kegg
ID rcu:RCOM_1048110
description protein arginine n-methyltransferase 1, putative (EC:2.1.1.125)
nr
ID XP_012076792.1
description PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
swissprot
ID Q9SU94
description Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1
trembl
ID A0A067KCA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07313 PE=4 SV=1
Gene Ontology
ID GO:0008168
description protein arginine n-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05302: 7051-10848 , PASA_asmbl_05303: 7110-10848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_010 0.0 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
2 Hb_001279_190 0.0595710435 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
3 Hb_002687_180 0.067907555 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_007483_070 0.0743193014 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
5 Hb_001504_010 0.0749492335 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
6 Hb_006438_020 0.0764210403 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
7 Hb_004228_120 0.0775224198 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
8 Hb_000579_080 0.0815404528 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
9 Hb_002304_050 0.0835291246 - - pyruvate kinase, putative [Ricinus communis]
10 Hb_000926_060 0.0848972349 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000120_890 0.0859633564 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
12 Hb_000753_160 0.0860321281 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
13 Hb_012633_050 0.0880506439 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000229_050 0.0881635286 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
15 Hb_001227_120 0.0884051286 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
16 Hb_002740_080 0.0890267946 - - flap endonuclease-1, putative [Ricinus communis]
17 Hb_003498_100 0.0895704645 - - component of oligomeric golgi complex, putative [Ricinus communis]
18 Hb_003540_050 0.0907997611 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
19 Hb_001250_050 0.0908731794 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
20 Hb_002552_040 0.0909680749 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]

Gene co-expression network

sample Hb_011716_010 Hb_011716_010 Hb_001279_190 Hb_001279_190 Hb_011716_010--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_011716_010--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_011716_010--Hb_006438_020 Hb_004228_120 Hb_004228_120 Hb_011716_010--Hb_004228_120 Hb_001279_190--Hb_007483_070 Hb_001279_190--Hb_002687_180 Hb_001279_190--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_002687_180--Hb_004228_120 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_007483_070--Hb_001504_010 Hb_008304_020 Hb_008304_020 Hb_007483_070--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_001504_010--Hb_008304_020 Hb_001504_010--Hb_000815_300 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_006438_020--Hb_002687_180 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_004228_120--Hb_001227_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.0872 12.2979 32.0991 24.9586 7.5629 7.02946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.66417 10.4375 6.67654 19.0047 14.6166

CAGE analysis