Hb_011716_020

Information

Type -
Description -
Location Contig11716: 12251-15507
Sequence    

Annotation

kegg
ID rcu:RCOM_1048090
description hypothetical protein
nr
ID XP_012076790.1
description PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07311 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05304: 12319-15222
cDNA
(Sanger)
(ID:Location)		 024_K10.ab1: 12322-13028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_020 0.0 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
2 Hb_002028_170 0.0618208763 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
3 Hb_002974_060 0.0659750505 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
4 Hb_002600_140 0.0701437248 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
5 Hb_000023_190 0.0725370171 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_002027_270 0.0766450172 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
7 Hb_000600_070 0.0775993414 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
8 Hb_000613_080 0.0833347073 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
9 Hb_001675_070 0.0847668502 - - eukaryotic translation elongation factor, putative [Ricinus communis]
10 Hb_000236_310 0.0850820458 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
11 Hb_000347_130 0.0856007878 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
12 Hb_000271_090 0.0862968193 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_003966_030 0.0866365457 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
14 Hb_002551_070 0.0889661688 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
15 Hb_001617_060 0.0890535971 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
16 Hb_000343_030 0.0897907333 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
17 Hb_005679_050 0.0898318212 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000158_100 0.0899833253 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003916_010 0.090056409 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
20 Hb_100215_010 0.0905779814 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011716_020 Hb_011716_020 Hb_002028_170 Hb_002028_170 Hb_011716_020--Hb_002028_170 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_002600_140 Hb_002600_140 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_003623_030 Hb_003623_030 Hb_002028_170--Hb_003623_030 Hb_000158_100 Hb_000158_100 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_002551_070 Hb_002551_070 Hb_002974_060--Hb_002551_070 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010 Hb_000236_310 Hb_000236_310 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_003464_020 Hb_003464_020 Hb_000023_190--Hb_003464_020 Hb_000567_050 Hb_000567_050 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_010381_060 Hb_010381_060 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_025012_010 Hb_025012_010 Hb_002027_270--Hb_025012_010 Hb_004619_050 Hb_004619_050 Hb_002027_270--Hb_004619_050 Hb_002027_270--Hb_000567_050 Hb_000031_220 Hb_000031_220 Hb_002027_270--Hb_000031_220 Hb_002027_270--Hb_000600_070 Hb_000429_120 Hb_000429_120 Hb_002027_270--Hb_000429_120 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000743_040 Hb_000743_040 Hb_000600_070--Hb_000743_040 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_000567_050 Hb_003428_070 Hb_003428_070 Hb_000600_070--Hb_003428_070 Hb_000600_070--Hb_000023_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.79724 5.66295 2.69468 6.19508 9.86142 16.6733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0233 3.37019 5.06091 10.3972 5.82585

CAGE analysis