Hb_011716_030

Information

Type -
Description -
Location Contig11716: 16685-20359
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06910g
description hypothetical protein
nr
ID XP_011011864.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
swissprot
ID Q9ZUW3
description Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
trembl
ID U5FHM8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06910g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05305: 16536-17253 , PASA_asmbl_05307: 18315-18482 , PASA_asmbl_05309: 19453-19711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_030 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
2 Hb_000204_210 0.0963588176 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
3 Hb_000107_420 0.0973957818 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
4 Hb_168697_010 0.1164254293 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
5 Hb_000270_670 0.1180754089 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
6 Hb_009486_200 0.1198529238 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
7 Hb_000206_240 0.1218870372 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003906_160 0.1234645564 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
9 Hb_000140_230 0.1249766759 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
10 Hb_001141_390 0.1250136485 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
11 Hb_000025_520 0.1251794645 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
12 Hb_002701_040 0.1252594549 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
13 Hb_002316_150 0.1260509463 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
14 Hb_010874_040 0.1281804748 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
15 Hb_002678_020 0.1289070834 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
16 Hb_005015_070 0.1291794488 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
17 Hb_004374_070 0.1297225759 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
18 Hb_008500_010 0.1299087643 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
19 Hb_001085_060 0.1307183842 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
20 Hb_004690_040 0.1315369638 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]

Gene co-expression network

sample Hb_011716_030 Hb_011716_030 Hb_000204_210 Hb_000204_210 Hb_011716_030--Hb_000204_210 Hb_000107_420 Hb_000107_420 Hb_011716_030--Hb_000107_420 Hb_168697_010 Hb_168697_010 Hb_011716_030--Hb_168697_010 Hb_000270_670 Hb_000270_670 Hb_011716_030--Hb_000270_670 Hb_009486_200 Hb_009486_200 Hb_011716_030--Hb_009486_200 Hb_000206_240 Hb_000206_240 Hb_011716_030--Hb_000206_240 Hb_001584_150 Hb_001584_150 Hb_000204_210--Hb_001584_150 Hb_008500_010 Hb_008500_010 Hb_000204_210--Hb_008500_010 Hb_002678_020 Hb_002678_020 Hb_000204_210--Hb_002678_020 Hb_001507_020 Hb_001507_020 Hb_000204_210--Hb_001507_020 Hb_001141_390 Hb_001141_390 Hb_000204_210--Hb_001141_390 Hb_000204_210--Hb_009486_200 Hb_000107_420--Hb_000206_240 Hb_001085_060 Hb_001085_060 Hb_000107_420--Hb_001085_060 Hb_007441_220 Hb_007441_220 Hb_000107_420--Hb_007441_220 Hb_004374_070 Hb_004374_070 Hb_000107_420--Hb_004374_070 Hb_002276_130 Hb_002276_130 Hb_000107_420--Hb_002276_130 Hb_000107_420--Hb_000204_210 Hb_000140_230 Hb_000140_230 Hb_168697_010--Hb_000140_230 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_048219_010 Hb_048219_010 Hb_168697_010--Hb_048219_010 Hb_003020_050 Hb_003020_050 Hb_168697_010--Hb_003020_050 Hb_168697_010--Hb_009486_200 Hb_002316_150 Hb_002316_150 Hb_000270_670--Hb_002316_150 Hb_000172_110 Hb_000172_110 Hb_000270_670--Hb_000172_110 Hb_000270_670--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_000270_670--Hb_000866_120 Hb_000890_050 Hb_000890_050 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_002311_040 Hb_002311_040 Hb_009486_200--Hb_002311_040 Hb_009486_200--Hb_008500_010 Hb_009486_200--Hb_004143_130 Hb_012656_030 Hb_012656_030 Hb_009486_200--Hb_012656_030 Hb_009486_200--Hb_002678_020 Hb_004052_090 Hb_004052_090 Hb_000206_240--Hb_004052_090 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000213_100 Hb_000213_100 Hb_000206_240--Hb_000213_100 Hb_000258_270 Hb_000258_270 Hb_000206_240--Hb_000258_270 Hb_007483_100 Hb_007483_100 Hb_000206_240--Hb_007483_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.829475 3.0481 0.344172 0.683013 1.40391 2.44437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10459 1.50603 3.19604 1.1298 1.49096

CAGE analysis