Hb_011716_110

Information

Type -
Description -
Location Contig11716: 85054-92989
Sequence    

Annotation

kegg
ID rcu:RCOM_1047800
description ATP binding protein, putative
nr
ID XP_012076895.1
description PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID A0A067KPT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07385 PE=4 SV=1
Gene Ontology
ID GO:0004672
description inactive protein kinase selmodraft_444075

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05316: 84938-85143 , PASA_asmbl_05317: 85297-86610 , PASA_asmbl_05319: 88775-90069 , PASA_asmbl_05320: 91811-92081 , PASA_asmbl_05321: 92208-104800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_110 0.0 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
2 Hb_004162_120 0.1246765909 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
3 Hb_065500_030 0.1259889021 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
4 Hb_001544_080 0.1270185634 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
5 Hb_009897_010 0.1293170503 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_000599_130 0.1312238747 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
7 Hb_080451_010 0.1389919064 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
8 Hb_003155_020 0.1450409674 - - Rpp4C3 [Medicago truncatula]
9 Hb_000175_350 0.1452978819 - - phopholipase d alpha, putative [Ricinus communis]
10 Hb_054885_020 0.1473800644 - - -
11 Hb_011861_080 0.1511615074 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
12 Hb_000362_090 0.1513155087 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
13 Hb_001369_770 0.1524847284 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
14 Hb_039342_010 0.1525484738 - - pyruvate decarboxylase [Hevea brasiliensis]
15 Hb_001278_040 0.1546647677 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
16 Hb_000107_560 0.1548838728 - - glutamate receptor 3 plant, putative [Ricinus communis]
17 Hb_000120_520 0.1554531733 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
18 Hb_004108_170 0.1558830759 - - conserved hypothetical protein [Ricinus communis]
19 Hb_117895_010 0.1599348689 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
20 Hb_000940_160 0.1606851414 - - hypothetical protein VITISV_017596 [Vitis vinifera]

Gene co-expression network

sample Hb_011716_110 Hb_011716_110 Hb_004162_120 Hb_004162_120 Hb_011716_110--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_011716_110--Hb_065500_030 Hb_001544_080 Hb_001544_080 Hb_011716_110--Hb_001544_080 Hb_009897_010 Hb_009897_010 Hb_011716_110--Hb_009897_010 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_080451_010 Hb_080451_010 Hb_011716_110--Hb_080451_010 Hb_004162_120--Hb_065500_030 Hb_000751_140 Hb_000751_140 Hb_004162_120--Hb_000751_140 Hb_000917_100 Hb_000917_100 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_004162_120--Hb_080451_010 Hb_002005_120 Hb_002005_120 Hb_004162_120--Hb_002005_120 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_065500_030--Hb_000599_130 Hb_117895_010 Hb_117895_010 Hb_001544_080--Hb_117895_010 Hb_011310_200 Hb_011310_200 Hb_001544_080--Hb_011310_200 Hb_000866_370 Hb_000866_370 Hb_001544_080--Hb_000866_370 Hb_001544_080--Hb_009897_010 Hb_029977_050 Hb_029977_050 Hb_001544_080--Hb_029977_050 Hb_003155_020 Hb_003155_020 Hb_009897_010--Hb_003155_020 Hb_009897_010--Hb_065500_030 Hb_009897_010--Hb_004162_120 Hb_089100_040 Hb_089100_040 Hb_009897_010--Hb_089100_040 Hb_009897_010--Hb_000751_140 Hb_000175_350 Hb_000175_350 Hb_000599_130--Hb_000175_350 Hb_001369_770 Hb_001369_770 Hb_000599_130--Hb_001369_770 Hb_018301_010 Hb_018301_010 Hb_000599_130--Hb_018301_010 Hb_002942_110 Hb_002942_110 Hb_000599_130--Hb_002942_110 Hb_004310_040 Hb_004310_040 Hb_000599_130--Hb_004310_040 Hb_000120_420 Hb_000120_420 Hb_000599_130--Hb_000120_420 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68734 11.7531 1.68713 5.28498 3.15959 4.33327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.64079 0.348171 1.81286 6.45892 1.43321

CAGE analysis