Hb_011724_040

Information

Type -
Description -
Location Contig11724: 43941-44846
Sequence    

Annotation

kegg
ID rcu:RCOM_0987040
description hypothetical protein
nr
ID XP_012070707.1
description PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00769 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05340: 44002-44800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011724_040 0.0 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
2 Hb_002534_020 0.0569251542 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
3 Hb_001534_060 0.0601390825 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
4 Hb_003632_020 0.0621480061 - - calcium-binding family protein [Populus trichocarpa]
5 Hb_006132_080 0.0627867674 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
6 Hb_002121_050 0.0645069554 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
7 Hb_033187_010 0.0645762478 - - epoxide hydrolase, putative [Ricinus communis]
8 Hb_009707_020 0.065041401 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
9 Hb_000497_050 0.067795547 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
10 Hb_002328_080 0.0681391312 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_000512_120 0.0685049154 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
12 Hb_010326_020 0.0698884753 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
13 Hb_004452_070 0.0712200098 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
14 Hb_004032_400 0.0712260957 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
15 Hb_002752_020 0.072543813 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
16 Hb_001775_020 0.07308707 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
17 Hb_000139_170 0.0736979959 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
18 Hb_000179_010 0.0738013257 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
19 Hb_007187_010 0.0738429603 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
20 Hb_000844_080 0.0744042899 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]

Gene co-expression network

sample Hb_011724_040 Hb_011724_040 Hb_002534_020 Hb_002534_020 Hb_011724_040--Hb_002534_020 Hb_001534_060 Hb_001534_060 Hb_011724_040--Hb_001534_060 Hb_003632_020 Hb_003632_020 Hb_011724_040--Hb_003632_020 Hb_006132_080 Hb_006132_080 Hb_011724_040--Hb_006132_080 Hb_002121_050 Hb_002121_050 Hb_011724_040--Hb_002121_050 Hb_033187_010 Hb_033187_010 Hb_011724_040--Hb_033187_010 Hb_001277_350 Hb_001277_350 Hb_002534_020--Hb_001277_350 Hb_146255_030 Hb_146255_030 Hb_002534_020--Hb_146255_030 Hb_000497_050 Hb_000497_050 Hb_002534_020--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_002534_020--Hb_002752_020 Hb_004032_400 Hb_004032_400 Hb_002534_020--Hb_004032_400 Hb_000731_150 Hb_000731_150 Hb_001534_060--Hb_000731_150 Hb_002328_080 Hb_002328_080 Hb_001534_060--Hb_002328_080 Hb_000512_120 Hb_000512_120 Hb_001534_060--Hb_000512_120 Hb_009707_020 Hb_009707_020 Hb_001534_060--Hb_009707_020 Hb_068580_010 Hb_068580_010 Hb_001534_060--Hb_068580_010 Hb_010326_020 Hb_010326_020 Hb_003632_020--Hb_010326_020 Hb_003632_020--Hb_002121_050 Hb_002375_030 Hb_002375_030 Hb_003632_020--Hb_002375_030 Hb_003632_020--Hb_001277_350 Hb_008195_070 Hb_008195_070 Hb_003632_020--Hb_008195_070 Hb_006132_080--Hb_002121_050 Hb_003186_030 Hb_003186_030 Hb_006132_080--Hb_003186_030 Hb_004452_070 Hb_004452_070 Hb_006132_080--Hb_004452_070 Hb_000251_150 Hb_000251_150 Hb_006132_080--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_006132_080--Hb_000179_010 Hb_002121_050--Hb_000497_050 Hb_002121_050--Hb_002752_020 Hb_156093_010 Hb_156093_010 Hb_002121_050--Hb_156093_010 Hb_008225_050 Hb_008225_050 Hb_002121_050--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_002121_050--Hb_007537_040 Hb_033187_010--Hb_000497_050 Hb_033187_010--Hb_000179_010 Hb_033187_010--Hb_002752_020 Hb_033187_010--Hb_006132_080 Hb_033187_010--Hb_002121_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0774393 0.145061 11.26 6.21007 0 0.0380251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0557428 0 0.0677771 18.393

CAGE analysis