Hb_011781_040

Information

Type -
Description -
Location Contig11781: 80394-81531
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011781_040 0.0 - - -
2 Hb_000792_080 0.1757168215 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
3 Hb_001032_030 0.2348249377 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
4 Hb_023051_010 0.2529520979 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
5 Hb_063716_060 0.2791279155 - - conserved hypothetical protein [Ricinus communis]
6 Hb_094437_010 0.2838882655 - - -
7 Hb_115045_010 0.2846638844 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000505_070 0.2895684961 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
9 Hb_017387_030 0.3273698387 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_005601_050 0.3323934976 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
11 Hb_000002_320 0.3343929131 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
12 Hb_048103_010 0.3348433889 - - -
13 Hb_001673_030 0.3375705148 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
14 Hb_007508_040 0.346360024 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
15 Hb_000922_440 0.3581802528 - - -
16 Hb_115031_030 0.3585758141 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
17 Hb_070385_010 0.3597990311 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
18 Hb_000521_110 0.3620278727 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000025_060 0.3642992339 - - unknown [Populus trichocarpa]
20 Hb_172572_010 0.3658175208 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]

Gene co-expression network

sample Hb_011781_040 Hb_011781_040 Hb_000792_080 Hb_000792_080 Hb_011781_040--Hb_000792_080 Hb_001032_030 Hb_001032_030 Hb_011781_040--Hb_001032_030 Hb_023051_010 Hb_023051_010 Hb_011781_040--Hb_023051_010 Hb_063716_060 Hb_063716_060 Hb_011781_040--Hb_063716_060 Hb_094437_010 Hb_094437_010 Hb_011781_040--Hb_094437_010 Hb_115045_010 Hb_115045_010 Hb_011781_040--Hb_115045_010 Hb_000792_080--Hb_023051_010 Hb_048103_010 Hb_048103_010 Hb_000792_080--Hb_048103_010 Hb_055339_010 Hb_055339_010 Hb_000792_080--Hb_055339_010 Hb_001673_030 Hb_001673_030 Hb_000792_080--Hb_001673_030 Hb_000792_080--Hb_001032_030 Hb_017895_010 Hb_017895_010 Hb_001032_030--Hb_017895_010 Hb_001032_030--Hb_115045_010 Hb_000907_040 Hb_000907_040 Hb_001032_030--Hb_000907_040 Hb_002540_040 Hb_002540_040 Hb_001032_030--Hb_002540_040 Hb_001032_030--Hb_094437_010 Hb_000377_140 Hb_000377_140 Hb_023051_010--Hb_000377_140 Hb_023051_010--Hb_048103_010 Hb_004052_160 Hb_004052_160 Hb_023051_010--Hb_004052_160 Hb_000982_150 Hb_000982_150 Hb_023051_010--Hb_000982_150 Hb_000002_320 Hb_000002_320 Hb_063716_060--Hb_000002_320 Hb_063716_060--Hb_002540_040 Hb_000521_110 Hb_000521_110 Hb_063716_060--Hb_000521_110 Hb_000219_070 Hb_000219_070 Hb_063716_060--Hb_000219_070 Hb_000922_440 Hb_000922_440 Hb_063716_060--Hb_000922_440 Hb_172572_010 Hb_172572_010 Hb_094437_010--Hb_172572_010 Hb_001278_080 Hb_001278_080 Hb_094437_010--Hb_001278_080 Hb_010534_050 Hb_010534_050 Hb_094437_010--Hb_010534_050 Hb_154381_010 Hb_154381_010 Hb_094437_010--Hb_154381_010 Hb_005601_050 Hb_005601_050 Hb_115045_010--Hb_005601_050 Hb_005016_070 Hb_005016_070 Hb_115045_010--Hb_005016_070 Hb_000589_230 Hb_000589_230 Hb_115045_010--Hb_000589_230 Hb_081815_010 Hb_081815_010 Hb_115045_010--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_115045_010--Hb_001418_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0891326 0 0.0679113 0.0438689 0 0.134783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis