Hb_011791_020

Information

Type -
Description -
Location Contig11791: 22611-23449
Sequence    

Annotation

kegg
ID csv:101208150
description UPF0202 protein At1g10490-like
nr
ID KGN48420.1
description hypothetical protein Csa_6G486930 [Cucumis sativus]
swissprot
ID Q9XIK4
description UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2
trembl
ID A0A0A0KFD1
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011791_020 0.0 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
2 Hb_143986_010 0.0861529749 - - PREDICTED: beta-galactosidase [Jatropha curcas]
3 Hb_120470_010 0.0876238047 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
4 Hb_000526_060 0.0977380521 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
5 Hb_000123_350 0.1023906849 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
6 Hb_000117_070 0.1052598697 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_004032_040 0.1057085537 - - unknown [Medicago truncatula]
8 Hb_000896_060 0.1068362867 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002942_110 0.1126890444 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
10 Hb_000094_320 0.1218191078 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
11 Hb_002387_070 0.1250051922 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
12 Hb_000940_160 0.1250858625 - - hypothetical protein VITISV_017596 [Vitis vinifera]
13 Hb_008948_160 0.1252789281 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
14 Hb_003060_090 0.1253852322 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
15 Hb_006663_040 0.1278059628 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
16 Hb_012368_100 0.1288157185 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
17 Hb_009674_080 0.1293072589 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
18 Hb_000599_130 0.1310797549 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
19 Hb_002073_280 0.1317545255 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_000327_080 0.1323061341 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]

Gene co-expression network

sample Hb_011791_020 Hb_011791_020 Hb_143986_010 Hb_143986_010 Hb_011791_020--Hb_143986_010 Hb_120470_010 Hb_120470_010 Hb_011791_020--Hb_120470_010 Hb_000526_060 Hb_000526_060 Hb_011791_020--Hb_000526_060 Hb_000123_350 Hb_000123_350 Hb_011791_020--Hb_000123_350 Hb_000117_070 Hb_000117_070 Hb_011791_020--Hb_000117_070 Hb_004032_040 Hb_004032_040 Hb_011791_020--Hb_004032_040 Hb_008948_160 Hb_008948_160 Hb_143986_010--Hb_008948_160 Hb_143986_010--Hb_120470_010 Hb_000327_080 Hb_000327_080 Hb_143986_010--Hb_000327_080 Hb_000105_020 Hb_000105_020 Hb_143986_010--Hb_000105_020 Hb_143986_010--Hb_000117_070 Hb_120470_010--Hb_000526_060 Hb_120470_010--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_120470_010--Hb_004032_040 Hb_000896_060 Hb_000896_060 Hb_000526_060--Hb_000896_060 Hb_000526_060--Hb_000117_070 Hb_000526_060--Hb_007818_030 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_014834_060 Hb_014834_060 Hb_000123_350--Hb_014834_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_000703_130 Hb_000703_200 Hb_000703_200 Hb_004032_040--Hb_000703_200 Hb_004032_040--Hb_012368_100 Hb_000094_320 Hb_000094_320 Hb_004032_040--Hb_000094_320 Hb_004032_040--Hb_000117_070 Hb_000574_420 Hb_000574_420 Hb_004032_040--Hb_000574_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44288 13.8773 3.63835 1.67807 5.8396 4.04517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00477 0.789669 2.34904 5.73084 3.51672

CAGE analysis