Hb_011794_020

Information

Type -
Description -
Location Contig11794: 2071-2373
Sequence    

Annotation

kegg
ID rcu:RCOM_1615260
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511861.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C501
description Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
trembl
ID B9RDS2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1615260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_115578_010 0.211507153 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
3 Hb_008053_020 0.2250207096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_130134_030 0.2320031517 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
5 Hb_002249_110 0.234061678 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
6 Hb_130134_020 0.2503283846 - - -
7 Hb_001385_090 0.2518500227 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
8 Hb_000014_130 0.2523588171 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
9 Hb_074979_030 0.2544641135 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
10 Hb_002837_090 0.258289804 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
11 Hb_077211_010 0.2599283011 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
12 Hb_032018_010 0.2602392563 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
13 Hb_111834_010 0.2609679016 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_041237_010 0.2640209154 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000295_090 0.267035138 - - Clathrin light chain 2 [Glycine soja]
16 Hb_001418_060 0.27267106 - - -
17 Hb_070385_010 0.275058691 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
18 Hb_009189_030 0.2757337282 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
19 Hb_159307_010 0.2783641166 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_005203_050 0.2864649081 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_011794_020 Hb_011794_020 Hb_115578_010 Hb_115578_010 Hb_011794_020--Hb_115578_010 Hb_008053_020 Hb_008053_020 Hb_011794_020--Hb_008053_020 Hb_130134_030 Hb_130134_030 Hb_011794_020--Hb_130134_030 Hb_002249_110 Hb_002249_110 Hb_011794_020--Hb_002249_110 Hb_130134_020 Hb_130134_020 Hb_011794_020--Hb_130134_020 Hb_001385_090 Hb_001385_090 Hb_011794_020--Hb_001385_090 Hb_000295_090 Hb_000295_090 Hb_115578_010--Hb_000295_090 Hb_115578_010--Hb_001385_090 Hb_134310_020 Hb_134310_020 Hb_115578_010--Hb_134310_020 Hb_115578_010--Hb_002249_110 Hb_115578_010--Hb_130134_020 Hb_000059_090 Hb_000059_090 Hb_115578_010--Hb_000059_090 Hb_009189_030 Hb_009189_030 Hb_008053_020--Hb_009189_030 Hb_009686_010 Hb_009686_010 Hb_008053_020--Hb_009686_010 Hb_027255_010 Hb_027255_010 Hb_008053_020--Hb_027255_010 Hb_125861_010 Hb_125861_010 Hb_008053_020--Hb_125861_010 Hb_000853_290 Hb_000853_290 Hb_008053_020--Hb_000853_290 Hb_130134_030--Hb_130134_020 Hb_178041_010 Hb_178041_010 Hb_130134_030--Hb_178041_010 Hb_088428_010 Hb_088428_010 Hb_130134_030--Hb_088428_010 Hb_003376_070 Hb_003376_070 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_002249_110--Hb_000295_090 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_070385_010 Hb_070385_010 Hb_002249_110--Hb_070385_010 Hb_003297_020 Hb_003297_020 Hb_002249_110--Hb_003297_020 Hb_002249_110--Hb_001385_090 Hb_130134_020--Hb_134310_020 Hb_130134_020--Hb_000295_090 Hb_130134_020--Hb_178041_010 Hb_130134_020--Hb_003376_070 Hb_130134_020--Hb_088428_010 Hb_001418_060 Hb_001418_060 Hb_001385_090--Hb_001418_060 Hb_001385_090--Hb_000295_090 Hb_000523_100 Hb_000523_100 Hb_001385_090--Hb_000523_100 Hb_001385_090--Hb_130134_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41633 1.38436 0.409129 0.54257 2.40046 7.3085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis