Hb_011794_060

Information

Type -
Description -
Location Contig11794: 39088-43731
Sequence    

Annotation

kegg
ID rcu:RCOM_1615230
description Beta-amylase, putative (EC:3.2.1.2)
nr
ID XP_012083395.1
description PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O65258
description Beta-amylase 2, chloroplastic OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=2
trembl
ID A0A067K8N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14401 PE=3 SV=1
Gene Ontology
ID GO:0009570
description beta-amylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05401: 39652-40687 , PASA_asmbl_05402: 41250-41654 , PASA_asmbl_05403: 41317-41735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_060 0.0 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000179_020 0.0301664486 - - amidase, putative [Ricinus communis]
3 Hb_000889_020 0.0715526796 - - ribosome biogenesis protein brix, putative [Ricinus communis]
4 Hb_003602_040 0.0767580284 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_002174_060 0.076810457 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
6 Hb_002079_010 0.0772528388 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
7 Hb_001017_040 0.0839445928 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
8 Hb_004195_280 0.0871063055 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
9 Hb_001866_110 0.0885870063 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
10 Hb_000184_110 0.0889107236 - - hypothetical protein F383_18769 [Gossypium arboreum]
11 Hb_071736_010 0.0892301256 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
12 Hb_005883_050 0.0896904646 - - PREDICTED: transportin-3 [Jatropha curcas]
13 Hb_002030_030 0.0899041573 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
14 Hb_003673_060 0.0954682648 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
15 Hb_007407_040 0.0956814535 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_001855_010 0.0959695986 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
17 Hb_000373_240 0.0960178393 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
18 Hb_004724_200 0.0969029997 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
19 Hb_000696_300 0.0972399529 - - hypothetical protein EUGRSUZ_J01717 [Eucalyptus grandis]
20 Hb_007426_030 0.0975260742 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]

Gene co-expression network

sample Hb_011794_060 Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_011794_060--Hb_000179_020 Hb_000889_020 Hb_000889_020 Hb_011794_060--Hb_000889_020 Hb_003602_040 Hb_003602_040 Hb_011794_060--Hb_003602_040 Hb_002174_060 Hb_002174_060 Hb_011794_060--Hb_002174_060 Hb_002079_010 Hb_002079_010 Hb_011794_060--Hb_002079_010 Hb_001017_040 Hb_001017_040 Hb_011794_060--Hb_001017_040 Hb_000179_020--Hb_002174_060 Hb_000179_020--Hb_002079_010 Hb_000179_020--Hb_000889_020 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_009118_010 Hb_009118_010 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_006663_100 Hb_006663_100 Hb_003602_040--Hb_006663_100 Hb_002174_060--Hb_004195_280 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_007426_030 Hb_007426_030 Hb_002079_010--Hb_007426_030 Hb_006400_060 Hb_006400_060 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_001017_040--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_005662_030 Hb_005662_030 Hb_001017_040--Hb_005662_030 Hb_001017_040--Hb_000179_020 Hb_005396_130 Hb_005396_130 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.30435 1.91591 2.1824 1.89275 8.13743 12.1017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.63497 4.42385 6.04328 4.30642 4.11408

CAGE analysis