Hb_011794_070

Information

Type -
Description -
Location Contig11794: 46831-48921
Sequence    

Annotation

kegg
ID cam:101514831
description 60S ribosomal protein L36-2-like
nr
ID XP_012083401.1
description PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
swissprot
ID Q9M352
description 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1
trembl
ID A0A067K9Z5
description 60S ribosomal protein L36 OS=Jatropha curcas GN=JCGZ_14405 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l36-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05404: 45103-48921 , PASA_asmbl_05405: 48074-48288
cDNA
(Sanger)
(ID:Location)		 031_A17.ab1: 45108-48915 , 032_E08.ab1: 45108-48835 , 047_P09.ab1: 45103-48789

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_070 0.0 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
2 Hb_000329_040 0.057660421 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
3 Hb_000260_080 0.0596103212 - - thioredoxin H-type 1 [Hevea brasiliensis]
4 Hb_000703_140 0.0614623572 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
5 Hb_000883_050 0.0615943213 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
6 Hb_022250_040 0.0667740881 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
7 Hb_004108_230 0.0669541592 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
8 Hb_001427_120 0.0683005016 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
9 Hb_009711_030 0.0697733162 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
10 Hb_023386_080 0.0726809216 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
11 Hb_001008_060 0.0741821901 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
12 Hb_125000_010 0.0769684532 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_000086_070 0.0781741887 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
14 Hb_000444_050 0.0791233074 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
15 Hb_004837_140 0.0793211462 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
16 Hb_002874_190 0.0798383221 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
17 Hb_002603_100 0.0800743591 - - ATATH9, putative [Ricinus communis]
18 Hb_000376_050 0.0802158076 - - polyadenylate-binding protein, putative [Ricinus communis]
19 Hb_000956_010 0.0808881483 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_023732_070 0.0810175237 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]

Gene co-expression network

sample Hb_011794_070 Hb_011794_070 Hb_000329_040 Hb_000329_040 Hb_011794_070--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_011794_070--Hb_000260_080 Hb_000703_140 Hb_000703_140 Hb_011794_070--Hb_000703_140 Hb_000883_050 Hb_000883_050 Hb_011794_070--Hb_000883_050 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_000329_040--Hb_000260_080 Hb_023386_080 Hb_023386_080 Hb_000329_040--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_000329_040--Hb_000376_050 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_000260_080--Hb_000703_140 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000703_140--Hb_000376_050 Hb_000703_140--Hb_000883_050 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_002918_200 Hb_002918_200 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_004108_230--Hb_004837_140 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
864.323 146.364 242.159 258.616 545.765 767.496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
956.789 1150.35 882.842 275.312 161.89

CAGE analysis