Hb_011795_020

Information

Type -
Description -
Location Contig11795: 1262-3381
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05409: 976-3542 , PASA_asmbl_05410: 975-3542
cDNA
(Sanger)
(ID:Location)		 006_A01.ab1: 2780-3519 , 022_E20.ab1: 3086-3539 , 027_P03.ab1: 2818-3519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011795_020 0.0 - - -
2 Hb_032260_030 0.1014838786 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
3 Hb_006478_150 0.113272168 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
4 Hb_001016_090 0.1219959203 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
5 Hb_001085_270 0.1246027937 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
6 Hb_001863_090 0.1269662751 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
7 Hb_027380_180 0.12761088 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
8 Hb_002925_030 0.1279362342 - - 40S ribosomal protein S16B [Hevea brasiliensis]
9 Hb_000881_080 0.1280016683 - - conserved hypothetical protein [Ricinus communis]
10 Hb_180074_010 0.1295313007 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
11 Hb_000061_130 0.1302626113 - - rotamase, putative [Ricinus communis]
12 Hb_000193_120 0.1321018484 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
13 Hb_001832_120 0.1346005745 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
14 Hb_004216_050 0.1379285082 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
15 Hb_004156_040 0.1397764137 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
16 Hb_001369_170 0.1406904283 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
17 Hb_026048_070 0.142491875 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
18 Hb_002374_390 0.1444249901 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
19 Hb_033642_080 0.1454968265 - - V-type proton ATPase subunit E [Hevea brasiliensis]
20 Hb_005883_100 0.1464725205 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011795_020 Hb_011795_020 Hb_032260_030 Hb_032260_030 Hb_011795_020--Hb_032260_030 Hb_006478_150 Hb_006478_150 Hb_011795_020--Hb_006478_150 Hb_001016_090 Hb_001016_090 Hb_011795_020--Hb_001016_090 Hb_001085_270 Hb_001085_270 Hb_011795_020--Hb_001085_270 Hb_001863_090 Hb_001863_090 Hb_011795_020--Hb_001863_090 Hb_027380_180 Hb_027380_180 Hb_011795_020--Hb_027380_180 Hb_032260_030--Hb_001016_090 Hb_000881_080 Hb_000881_080 Hb_032260_030--Hb_000881_080 Hb_002925_030 Hb_002925_030 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_032260_030--Hb_001863_090 Hb_003398_120 Hb_003398_120 Hb_032260_030--Hb_003398_120 Hb_004567_120 Hb_004567_120 Hb_006478_150--Hb_004567_120 Hb_004216_050 Hb_004216_050 Hb_006478_150--Hb_004216_050 Hb_033642_080 Hb_033642_080 Hb_006478_150--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_006478_150--Hb_091433_020 Hb_000417_360 Hb_000417_360 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_000567_410 Hb_000567_410 Hb_001085_270--Hb_000567_410 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_002909_130 Hb_002909_130 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_000193_120 Hb_000193_120 Hb_001085_270--Hb_000193_120 Hb_001863_090--Hb_002925_030 Hb_011311_010 Hb_011311_010 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001863_090--Hb_001016_090 Hb_001863_090--Hb_003398_120 Hb_027380_180--Hb_000061_130 Hb_027380_180--Hb_000193_120 Hb_026048_070 Hb_026048_070 Hb_027380_180--Hb_026048_070 Hb_000103_010 Hb_000103_010 Hb_027380_180--Hb_000103_010 Hb_027380_180--Hb_001085_270 Hb_005474_060 Hb_005474_060 Hb_027380_180--Hb_005474_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.336967 0.475574 0.617078 0.342493 0.912032 0.582711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92013 3.48886 1.619 1.71457 0.357722

CAGE analysis