Hb_011826_010

Information

Type -
Description -
Location Contig11826: 6498-7499
Sequence    

Annotation

kegg
ID rcu:RCOM_0024370
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002527909.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ0
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011826_010 0.0 - - Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_000483_120 0.1197410236 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
3 Hb_119583_030 0.1214168211 - - unnamed protein product [Vitis vinifera]
4 Hb_057721_010 0.1259161907 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000025_800 0.1267939413 - - hypothetical protein VITISV_020143 [Vitis vinifera]
6 Hb_002163_070 0.1270445596 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
7 Hb_010252_010 0.1271038308 - - -
8 Hb_036602_010 0.1276809694 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
9 Hb_005217_070 0.1325021564 - - conserved hypothetical protein [Ricinus communis]
10 Hb_137862_020 0.1347514232 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
11 Hb_000039_080 0.1368406624 - - cyclin d, putative [Ricinus communis]
12 Hb_009083_020 0.137958941 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_003489_010 0.1390212474 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
14 Hb_185437_010 0.14019497 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
15 Hb_006197_010 0.1402646807 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
16 Hb_160950_010 0.1431710638 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
17 Hb_177179_020 0.1446305339 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001518_050 0.1450819893 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_014549_010 0.1452732077 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
20 Hb_000170_260 0.1490338351 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_011826_010 Hb_011826_010 Hb_000483_120 Hb_000483_120 Hb_011826_010--Hb_000483_120 Hb_119583_030 Hb_119583_030 Hb_011826_010--Hb_119583_030 Hb_057721_010 Hb_057721_010 Hb_011826_010--Hb_057721_010 Hb_000025_800 Hb_000025_800 Hb_011826_010--Hb_000025_800 Hb_002163_070 Hb_002163_070 Hb_011826_010--Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_011826_010--Hb_010252_010 Hb_177179_020 Hb_177179_020 Hb_000483_120--Hb_177179_020 Hb_000483_120--Hb_057721_010 Hb_000483_120--Hb_119583_030 Hb_000483_120--Hb_000025_800 Hb_179367_020 Hb_179367_020 Hb_000483_120--Hb_179367_020 Hb_003489_010 Hb_003489_010 Hb_000483_120--Hb_003489_010 Hb_119583_030--Hb_000025_800 Hb_119583_030--Hb_057721_010 Hb_119583_030--Hb_010252_010 Hb_119583_030--Hb_002163_070 Hb_185437_010 Hb_185437_010 Hb_119583_030--Hb_185437_010 Hb_137862_020 Hb_137862_020 Hb_057721_010--Hb_137862_020 Hb_057721_010--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_057721_010--Hb_023712_020 Hb_057721_010--Hb_177179_020 Hb_057721_010--Hb_000025_800 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_000025_800--Hb_010252_010 Hb_000025_800--Hb_002163_070 Hb_002163_070--Hb_010252_010 Hb_009083_020 Hb_009083_020 Hb_002163_070--Hb_009083_020 Hb_002163_070--Hb_137862_020 Hb_160950_010 Hb_160950_010 Hb_002163_070--Hb_160950_010 Hb_000248_080 Hb_000248_080 Hb_002163_070--Hb_000248_080 Hb_010252_010--Hb_009083_020 Hb_010252_010--Hb_160950_010 Hb_010252_010--Hb_185437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0662156 0.729952 1.94605 2.50705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0397577 0 0.0479628 0

CAGE analysis