Hb_011828_010

Information

Type -
Description -
Location Contig11828: 40237-48419
Sequence    

Annotation

kegg
ID rcu:RCOM_0819670
description Nodulation receptor kinase precursor, putative (EC:2.7.11.25)
nr
ID XP_012082271.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
swissprot
ID C0LGI2
description Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1
trembl
ID A0A067K1X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16457 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at1g67720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05442: 40358-40575 , PASA_asmbl_05443: 40663-40799 , PASA_asmbl_05444: 43148-48117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011828_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
2 Hb_000473_120 0.1031980324 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
3 Hb_000138_060 0.1117677689 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
4 Hb_002289_150 0.1152515951 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
5 Hb_001969_140 0.118454205 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
6 Hb_116702_010 0.1215315421 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
7 Hb_000271_220 0.1217503167 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
8 Hb_014361_090 0.1224290374 - - acyl-CoA binding protein 3A [Vernicia fordii]
9 Hb_005941_030 0.1228445996 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
10 Hb_000997_070 0.123293185 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
11 Hb_000603_020 0.1237122449 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
12 Hb_012762_060 0.1238198927 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
13 Hb_001195_310 0.1249568776 - - ATP binding protein, putative [Ricinus communis]
14 Hb_002909_100 0.1261147836 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
15 Hb_002217_320 0.1278387409 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
16 Hb_001140_170 0.1303799948 - - PREDICTED: remorin [Jatropha curcas]
17 Hb_020586_010 0.1330438006 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
18 Hb_000071_160 0.1340899933 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
19 Hb_000011_070 0.1355814083 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
20 Hb_003680_030 0.1367299553 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_011828_010 Hb_011828_010 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_031089_050 Hb_031089_050 Hb_000473_120--Hb_031089_050 Hb_001998_220 Hb_001998_220 Hb_000473_120--Hb_001998_220 Hb_020805_120 Hb_020805_120 Hb_000473_120--Hb_020805_120 Hb_003006_080 Hb_003006_080 Hb_000473_120--Hb_003006_080 Hb_002311_130 Hb_002311_130 Hb_000473_120--Hb_002311_130 Hb_000138_060--Hb_002289_150 Hb_000138_060--Hb_116702_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_026740_020 Hb_026740_020 Hb_002289_150--Hb_026740_020 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_000167_040 Hb_000167_040 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_000000_310 Hb_000000_310 Hb_116702_010--Hb_000000_310 Hb_026549_070 Hb_026549_070 Hb_116702_010--Hb_026549_070 Hb_116702_010--Hb_005192_010 Hb_116702_010--Hb_001969_140 Hb_000603_020 Hb_000603_020 Hb_000271_220--Hb_000603_020 Hb_012807_150 Hb_012807_150 Hb_000271_220--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91628 10.4493 8.4825 23.1599 3.19478 4.99542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54729 0.996246 1.77431 3.96476 14.802

CAGE analysis