Hb_011828_020

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig11828: 50343-52405
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G174600g
description hypothetical protein
nr
ID XP_012082274.1
description PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
swissprot
ID Q67XJ2
description Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1
trembl
ID V7CZA7
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G174600g PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05445: 50825-54107 , PASA_asmbl_05446: 51277-54107 , PASA_asmbl_05447: 51277-53822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011828_020 0.0 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
2 Hb_000395_080 0.0782282729 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
3 Hb_000877_060 0.0797219994 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
4 Hb_001477_130 0.081193664 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
5 Hb_003020_230 0.082146871 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
6 Hb_000613_140 0.0943786745 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_000923_050 0.0973647769 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
8 Hb_000522_080 0.097431693 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
9 Hb_001881_020 0.0979862239 - - clathrin binding protein, putative [Ricinus communis]
10 Hb_022461_010 0.0980856638 - - -
11 Hb_000608_420 0.0989176635 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
12 Hb_004223_280 0.098941592 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
13 Hb_007441_230 0.0998847447 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
14 Hb_000720_120 0.1005850591 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
15 Hb_000156_130 0.1019792642 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
16 Hb_002374_160 0.1020729142 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
17 Hb_002137_020 0.1025647782 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_012022_030 0.10309219 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
19 Hb_000057_200 0.1052014855 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
20 Hb_000371_080 0.1065173248 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]

Gene co-expression network

sample Hb_011828_020 Hb_011828_020 Hb_000395_080 Hb_000395_080 Hb_011828_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_011828_020--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_000613_140 Hb_000613_140 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050 Hb_000395_080--Hb_000877_060 Hb_000395_080--Hb_001477_130 Hb_000696_340 Hb_000696_340 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030 Hb_004221_010 Hb_004221_010 Hb_000877_060--Hb_004221_010 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060 Hb_004223_280 Hb_004223_280 Hb_001477_130--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_001477_130--Hb_002685_170 Hb_001477_130--Hb_002137_020 Hb_001477_130--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001477_130--Hb_005357_030 Hb_005997_010 Hb_005997_010 Hb_003020_230--Hb_005997_010 Hb_009954_040 Hb_009954_040 Hb_003020_230--Hb_009954_040 Hb_000371_080 Hb_000371_080 Hb_003020_230--Hb_000371_080 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070 Hb_000613_140--Hb_000720_120 Hb_000613_140--Hb_004223_280 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000510_130 Hb_000510_130 Hb_000613_140--Hb_000510_130 Hb_000329_650 Hb_000329_650 Hb_000923_050--Hb_000329_650 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000923_050--Hb_000696_340 Hb_002333_080 Hb_002333_080 Hb_000923_050--Hb_002333_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0046 14.9976 3.84531 9.58092 20.4699 37.0327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.3094 39.3862 23.1603 25.9062 5.86176

CAGE analysis