Hb_011828_030

Information

Type -
Description -
Location Contig11828: 56796-65105
Sequence    

Annotation

kegg
ID rcu:RCOM_0819650
description ubiquitin protein ligase E3a, putative
nr
ID XP_002525185.1
description ubiquitin protein ligase E3a, putative [Ricinus communis]
swissprot
ID Q9LYZ7
description E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=3 SV=1
trembl
ID B9SGR6
description Ubiquitin protein ligase E3a, putative OS=Ricinus communis GN=RCOM_0819650 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05448: 56737-57721 , PASA_asmbl_05449: 57730-59125 , PASA_asmbl_05450: 60522-61023 , PASA_asmbl_05451: 61194-61932 , PASA_asmbl_05452: 62498-63032 , PASA_asmbl_05453: 63117-64949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011828_030 0.0 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
2 Hb_001699_280 0.0667412447 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
3 Hb_000105_040 0.0775090133 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
4 Hb_011947_050 0.0779870107 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
5 Hb_000069_410 0.0845696019 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_000836_020 0.0847144169 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
7 Hb_003581_170 0.0849188685 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
8 Hb_174865_020 0.0873762077 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
9 Hb_000949_010 0.0893988059 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
10 Hb_000571_160 0.0913611955 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
11 Hb_007576_210 0.093518683 - - PREDICTED: protein furry homolog [Jatropha curcas]
12 Hb_065500_030 0.0955008551 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
13 Hb_001935_140 0.0969638142 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
14 Hb_188063_010 0.0991970164 - - hypothetical protein RCOM_1469330 [Ricinus communis]
15 Hb_001662_180 0.1003185206 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
16 Hb_003060_090 0.1025768784 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
17 Hb_002400_140 0.103058709 - - protein kinase, putative [Ricinus communis]
18 Hb_012184_060 0.1042833446 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
19 Hb_002005_120 0.1049340752 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
20 Hb_144744_010 0.1059267458 - - hypothetical protein JCGZ_19531 [Jatropha curcas]

Gene co-expression network

sample Hb_011828_030 Hb_011828_030 Hb_001699_280 Hb_001699_280 Hb_011828_030--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_011828_030--Hb_000105_040 Hb_011947_050 Hb_011947_050 Hb_011828_030--Hb_011947_050 Hb_000069_410 Hb_000069_410 Hb_011828_030--Hb_000069_410 Hb_000836_020 Hb_000836_020 Hb_011828_030--Hb_000836_020 Hb_003581_170 Hb_003581_170 Hb_011828_030--Hb_003581_170 Hb_001699_280--Hb_000105_040 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000105_040--Hb_000069_410 Hb_000105_040--Hb_001951_170 Hb_174865_020 Hb_174865_020 Hb_011947_050--Hb_174865_020 Hb_000949_010 Hb_000949_010 Hb_011947_050--Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_011947_050--Hb_003284_030 Hb_003211_040 Hb_003211_040 Hb_011947_050--Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_011947_050--Hb_007576_210 Hb_002333_050 Hb_002333_050 Hb_011947_050--Hb_002333_050 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_000069_410--Hb_001699_280 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_000836_020--Hb_188063_010 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_003581_170--Hb_000949_010 Hb_003581_170--Hb_011242_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6913 23.6891 3.38654 8.14985 10.4416 10.1054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.02817 3.60488 4.80344 14.2045 9.18388

CAGE analysis