Hb_011828_050

Information

Type -
Description -
Location Contig11828: 72306-74068
Sequence    

Annotation

kegg
ID rcu:RCOM_0819610
description 40S ribosomal protein S23, putative
nr
ID XP_002523902.1
description 40S ribosomal protein S23, putative [Ricinus communis]
swissprot
ID P46297
description 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1
trembl
ID A0A067K9V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16464 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05459: 72260-74060
cDNA
(Sanger)
(ID:Location)		 007_F18.ab1: 72409-74050 , 016_H22.ab1: 72409-74050 , 034_N12.ab1: 72364-73080 , 035_A13.ab1: 72580-74060 , 040_A11.ab1: 72365-74057 , 050_G13.ab1: 72635-74056 , 053_M18.ab1: 72467-74057

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011828_050 0.0 - - 40S ribosomal protein S23, putative [Ricinus communis]
2 Hb_043302_010 0.0537991122 - - ADP,ATP carrier protein, putative [Ricinus communis]
3 Hb_009767_120 0.0686275626 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
4 Hb_003746_040 0.0741877756 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
5 Hb_004944_010 0.0812847572 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
6 Hb_000742_140 0.0822497311 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003874_020 0.0823490963 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
8 Hb_000690_080 0.0842079656 transcription factor TF Family: HB -
9 Hb_000933_180 0.0856301247 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
10 Hb_000349_060 0.0868439627 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_001047_100 0.0884951899 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_000084_290 0.0888590359 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
13 Hb_000457_110 0.0903678758 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
14 Hb_004440_050 0.0923978086 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
15 Hb_003376_320 0.0986465049 - - 60S ribosomal protein L12A [Hevea brasiliensis]
16 Hb_001279_070 0.09930331 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
17 Hb_004204_200 0.1005445371 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
18 Hb_105386_010 0.1018818445 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
19 Hb_010128_130 0.1020949024 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
20 Hb_000977_130 0.1029498029 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]

Gene co-expression network

sample Hb_011828_050 Hb_011828_050 Hb_043302_010 Hb_043302_010 Hb_011828_050--Hb_043302_010 Hb_009767_120 Hb_009767_120 Hb_011828_050--Hb_009767_120 Hb_003746_040 Hb_003746_040 Hb_011828_050--Hb_003746_040 Hb_004944_010 Hb_004944_010 Hb_011828_050--Hb_004944_010 Hb_000742_140 Hb_000742_140 Hb_011828_050--Hb_000742_140 Hb_003874_020 Hb_003874_020 Hb_011828_050--Hb_003874_020 Hb_043302_010--Hb_003746_040 Hb_043302_010--Hb_009767_120 Hb_000690_080 Hb_000690_080 Hb_043302_010--Hb_000690_080 Hb_004204_200 Hb_004204_200 Hb_043302_010--Hb_004204_200 Hb_043302_010--Hb_004944_010 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_009767_120--Hb_003874_020 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_001047_100 Hb_001047_100 Hb_003746_040--Hb_001047_100 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_105386_010 Hb_105386_010 Hb_003746_040--Hb_105386_010 Hb_000290_020 Hb_000290_020 Hb_003746_040--Hb_000290_020 Hb_000349_060 Hb_000349_060 Hb_004944_010--Hb_000349_060 Hb_004944_010--Hb_000690_080 Hb_141131_010 Hb_141131_010 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_000714_030 Hb_000714_030 Hb_000742_140--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000742_140--Hb_000084_290 Hb_000742_140--Hb_000933_180 Hb_000742_140--Hb_009767_120 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_003874_020--Hb_000690_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
871.154 211.473 322.92 363.923 765.686 1165.06
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
592.375 1255.35 308.297 266.561 139.578

CAGE analysis