Hb_011848_010

Information

Type -
Description -
Location Contig11848: 7928-10497
Sequence    

Annotation

kegg
ID rcu:RCOM_1439050
description 40S ribosomal protein S4, putative
nr
ID XP_012080847.1
description PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
swissprot
ID Q8VYK6
description 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2
trembl
ID A0A067K6J4
description 40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05483: 7558-10526
cDNA
(Sanger)
(ID:Location)		 002_E09.ab1: 7565-10105 , 006_L11.ab1: 7558-10075 , 015_C08.ab1: 7565-10032

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011848_010 0.0 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
2 Hb_003091_010 0.055497437 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
3 Hb_000617_220 0.0574608636 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_000803_110 0.0634489534 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
5 Hb_004450_060 0.0661408758 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
6 Hb_000359_330 0.0667342491 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009222_010 0.0679167164 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000290_020 0.0699022583 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
9 Hb_001142_050 0.0706557926 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
10 Hb_003849_060 0.0732253759 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
11 Hb_000394_190 0.0739243495 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_000808_250 0.0750451086 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
13 Hb_001894_030 0.0767786753 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
14 Hb_001047_100 0.0799106465 - - 40S ribosomal protein S18, putative [Ricinus communis]
15 Hb_000072_140 0.0802627191 - - -
16 Hb_012799_110 0.0809007733 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
17 Hb_006623_020 0.08184908 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
18 Hb_003467_010 0.0838260221 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
19 Hb_011942_080 0.0838576822 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
20 Hb_000211_110 0.0842493599 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011848_010 Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_003091_010--Hb_000617_220 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_000803_110--Hb_003091_010 Hb_000976_320 Hb_000976_320 Hb_000803_110--Hb_000976_320 Hb_000394_190 Hb_000394_190 Hb_000803_110--Hb_000394_190 Hb_012799_110 Hb_012799_110 Hb_000803_110--Hb_012799_110 Hb_000803_110--Hb_000072_140 Hb_003467_010 Hb_003467_010 Hb_004450_060--Hb_003467_010 Hb_178968_100 Hb_178968_100 Hb_004450_060--Hb_178968_100 Hb_003849_060 Hb_003849_060 Hb_004450_060--Hb_003849_060 Hb_004450_060--Hb_000359_330 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_009222_010--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
469.977 245.961 263.593 145.584 540.291 545.929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
241.835 367.488 142.437 154.523 70.2715

CAGE analysis