Hb_011849_020

Information

Type -
Description -
Location Contig11849: 26020-27350
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38760g
description POPTRDRAFT_550316; dioxygenase family protein
nr
ID XP_002300430.1
description dioxygenase family protein [Populus trichocarpa]
swissprot
ID Q9SQ80
description Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1
trembl
ID B9GGW7
description Dioxygenase family protein OS=Populus trichocarpa GN=POPTR_0001s38760g PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05488: 26058-26669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011849_020 0.0 - - dioxygenase family protein [Populus trichocarpa]
2 Hb_000163_010 0.0856300635 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
3 Hb_003913_060 0.1129730175 - - ATP binding protein, putative [Ricinus communis]
4 Hb_015978_010 0.1331832448 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
5 Hb_000254_060 0.1413974308 - - conserved hypothetical protein [Ricinus communis]
6 Hb_179138_010 0.1505603015 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_000009_430 0.1506420328 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003398_090 0.1562398491 - - PREDICTED: expansin-A4 [Jatropha curcas]
9 Hb_159809_080 0.1563827295 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_000751_060 0.1604068002 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
11 Hb_001675_040 0.1614645595 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001430_090 0.1657949811 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
13 Hb_029510_090 0.1675726006 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
14 Hb_000934_180 0.1677290297 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
15 Hb_085315_010 0.1680937189 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_003861_090 0.168943904 - - adenylsulfate kinase, putative [Ricinus communis]
17 Hb_000373_060 0.1717824729 - - PREDICTED: extensin-3 [Camelina sativa]
18 Hb_000127_080 0.1718192067 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
19 Hb_004785_090 0.1735725816 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
20 Hb_003983_010 0.1743132763 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_011849_020 Hb_011849_020 Hb_000163_010 Hb_000163_010 Hb_011849_020--Hb_000163_010 Hb_003913_060 Hb_003913_060 Hb_011849_020--Hb_003913_060 Hb_015978_010 Hb_015978_010 Hb_011849_020--Hb_015978_010 Hb_000254_060 Hb_000254_060 Hb_011849_020--Hb_000254_060 Hb_179138_010 Hb_179138_010 Hb_011849_020--Hb_179138_010 Hb_000009_430 Hb_000009_430 Hb_011849_020--Hb_000009_430 Hb_000163_010--Hb_003913_060 Hb_003398_090 Hb_003398_090 Hb_000163_010--Hb_003398_090 Hb_000163_010--Hb_015978_010 Hb_000318_060 Hb_000318_060 Hb_000163_010--Hb_000318_060 Hb_003177_080 Hb_003177_080 Hb_000163_010--Hb_003177_080 Hb_003913_060--Hb_000318_060 Hb_003913_060--Hb_003398_090 Hb_003913_060--Hb_015978_010 Hb_000139_500 Hb_000139_500 Hb_003913_060--Hb_000139_500 Hb_015978_010--Hb_003398_090 Hb_000751_060 Hb_000751_060 Hb_015978_010--Hb_000751_060 Hb_010334_050 Hb_010334_050 Hb_015978_010--Hb_010334_050 Hb_001622_020 Hb_001622_020 Hb_000254_060--Hb_001622_020 Hb_001778_040 Hb_001778_040 Hb_000254_060--Hb_001778_040 Hb_168319_060 Hb_168319_060 Hb_000254_060--Hb_168319_060 Hb_065521_010 Hb_065521_010 Hb_000254_060--Hb_065521_010 Hb_029510_090 Hb_029510_090 Hb_000254_060--Hb_029510_090 Hb_000054_130 Hb_000054_130 Hb_000254_060--Hb_000054_130 Hb_003983_010 Hb_003983_010 Hb_179138_010--Hb_003983_010 Hb_159809_080 Hb_159809_080 Hb_179138_010--Hb_159809_080 Hb_001174_020 Hb_001174_020 Hb_179138_010--Hb_001174_020 Hb_000011_320 Hb_000011_320 Hb_179138_010--Hb_000011_320 Hb_008304_050 Hb_008304_050 Hb_179138_010--Hb_008304_050 Hb_000009_430--Hb_000751_060 Hb_007676_060 Hb_007676_060 Hb_000009_430--Hb_007676_060 Hb_000120_880 Hb_000120_880 Hb_000009_430--Hb_000120_880 Hb_000009_430--Hb_000254_060 Hb_000982_120 Hb_000982_120 Hb_000009_430--Hb_000982_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.114773 0.259334 2.33192 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0335165 0 2.37832 1.24563

CAGE analysis