Hb_011849_030

Information

Type -
Description -
Location Contig11849: 33846-38279
Sequence    

Annotation

kegg
ID rcu:RCOM_0746610
description hypothetical protein
nr
ID XP_002530129.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LE98
description Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1
trembl
ID B9SVW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0746610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05489: 33858-38068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011849_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001159_220 0.0820759337 - - ESC, putative [Ricinus communis]
3 Hb_001649_050 0.0965008464 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
4 Hb_005306_030 0.0970339127 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
5 Hb_004607_020 0.1179606792 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
6 Hb_027337_010 0.1204961945 - - Potassium transporter, putative [Ricinus communis]
7 Hb_002995_010 0.121152567 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
8 Hb_009339_040 0.1268419564 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002874_120 0.1285012152 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
10 Hb_000343_020 0.1308377468 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
11 Hb_004316_080 0.1361652051 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
12 Hb_000656_120 0.138388488 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
13 Hb_001776_130 0.1407160473 - - metallothionein [Hevea brasiliensis]
14 Hb_000103_460 0.147322345 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
15 Hb_005834_050 0.1505020536 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
16 Hb_000018_090 0.1519889787 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002817_030 0.154142104 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
18 Hb_002205_160 0.1553540823 - - chalcone isomerase [Hibiscus cannabinus]
19 Hb_080147_070 0.1581813435 - - Rop5 [Hevea brasiliensis]
20 Hb_003626_020 0.159908306 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]

Gene co-expression network

sample Hb_011849_030 Hb_011849_030 Hb_001159_220 Hb_001159_220 Hb_011849_030--Hb_001159_220 Hb_001649_050 Hb_001649_050 Hb_011849_030--Hb_001649_050 Hb_005306_030 Hb_005306_030 Hb_011849_030--Hb_005306_030 Hb_004607_020 Hb_004607_020 Hb_011849_030--Hb_004607_020 Hb_027337_010 Hb_027337_010 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_001159_220--Hb_005306_030 Hb_001159_220--Hb_001649_050 Hb_000103_460 Hb_000103_460 Hb_001159_220--Hb_000103_460 Hb_004316_080 Hb_004316_080 Hb_001159_220--Hb_004316_080 Hb_000656_120 Hb_000656_120 Hb_001159_220--Hb_000656_120 Hb_001649_050--Hb_005306_030 Hb_001649_050--Hb_004607_020 Hb_001366_380 Hb_001366_380 Hb_001649_050--Hb_001366_380 Hb_001649_050--Hb_004316_080 Hb_000260_670 Hb_000260_670 Hb_001649_050--Hb_000260_670 Hb_005306_030--Hb_001366_380 Hb_008143_050 Hb_008143_050 Hb_005306_030--Hb_008143_050 Hb_005306_030--Hb_000103_460 Hb_005306_030--Hb_004607_020 Hb_001284_070 Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_001310_060 Hb_001310_060 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_002700_030 Hb_002700_030 Hb_004607_020--Hb_002700_030 Hb_001369_550 Hb_001369_550 Hb_004607_020--Hb_001369_550 Hb_003992_130 Hb_003992_130 Hb_027337_010--Hb_003992_130 Hb_002817_030 Hb_002817_030 Hb_027337_010--Hb_002817_030 Hb_027337_010--Hb_003626_020 Hb_002918_220 Hb_002918_220 Hb_027337_010--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_027337_010--Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_027337_010--Hb_005568_140 Hb_005834_050 Hb_005834_050 Hb_002995_010--Hb_005834_050 Hb_002311_500 Hb_002311_500 Hb_002995_010--Hb_002311_500 Hb_001776_130 Hb_001776_130 Hb_002995_010--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_002995_010--Hb_000035_150 Hb_002995_010--Hb_002817_030 Hb_004567_070 Hb_004567_070 Hb_002995_010--Hb_004567_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208727 4.94843 28.9955 10.21 0.13674 0.0759079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0214145 0 6.93022 2.07048

CAGE analysis