Hb_011853_010

Information

Type -
Description -
Location Contig11853: 19655-33483
Sequence    

Annotation

kegg
ID egr:104451921
description probable serine/threonine-protein kinase At1g18390
nr
ID XP_012078007.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID A0A067KA33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13013 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g18390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05494: 19473-20475 , PASA_asmbl_05496: 20510-22347 , PASA_asmbl_05499: 33002-33407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011853_010 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
2 Hb_006700_040 0.1143388226 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
3 Hb_000227_330 0.115533009 - - Acyl-CoA synthetase [Ricinus communis]
4 Hb_001235_130 0.1205816545 - - -
5 Hb_001307_200 0.1221822819 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
6 Hb_000922_260 0.1303198415 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
7 Hb_000125_180 0.1318422962 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
8 Hb_053575_020 0.1330361012 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
9 Hb_000256_160 0.1354270958 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
10 Hb_033594_100 0.1359271959 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000668_110 0.1373997198 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
12 Hb_098533_010 0.1380759825 - - hypothetical protein L484_003492 [Morus notabilis]
13 Hb_000866_110 0.1404577695 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
14 Hb_073973_020 0.1407634024 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
15 Hb_001564_070 0.1420316051 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
16 Hb_000337_010 0.1457313877 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
17 Hb_000731_290 0.147813005 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000221_180 0.1478358764 - - VQ motif-containing family protein [Populus trichocarpa]
19 Hb_007229_050 0.1482422966 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
20 Hb_001006_010 0.1484432211 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_011853_010 Hb_011853_010 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_001040_150 Hb_001040_150 Hb_006700_040--Hb_001040_150 Hb_033594_100 Hb_033594_100 Hb_006700_040--Hb_033594_100 Hb_126398_020 Hb_126398_020 Hb_006700_040--Hb_126398_020 Hb_152868_030 Hb_152868_030 Hb_006700_040--Hb_152868_030 Hb_000656_200 Hb_000656_200 Hb_006700_040--Hb_000656_200 Hb_012325_010 Hb_012325_010 Hb_000227_330--Hb_012325_010 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000205_250 Hb_000205_250 Hb_000227_330--Hb_000205_250 Hb_000271_120 Hb_000271_120 Hb_000227_330--Hb_000271_120 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_000256_160 Hb_000256_160 Hb_001235_130--Hb_000256_160 Hb_007229_050 Hb_007229_050 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_073973_020 Hb_073973_020 Hb_001307_200--Hb_073973_020 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001268_300 Hb_001268_300 Hb_001307_200--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_001307_200--Hb_002888_040 Hb_000221_180 Hb_000221_180 Hb_001307_200--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_001307_200--Hb_000417_410 Hb_003490_050 Hb_003490_050 Hb_000922_260--Hb_003490_050 Hb_000668_110 Hb_000668_110 Hb_000922_260--Hb_000668_110 Hb_000256_110 Hb_000256_110 Hb_000922_260--Hb_000256_110 Hb_002232_490 Hb_002232_490 Hb_000922_260--Hb_002232_490 Hb_003549_050 Hb_003549_050 Hb_000922_260--Hb_003549_050 Hb_001405_080 Hb_001405_080 Hb_000922_260--Hb_001405_080 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_002235_310 Hb_002235_310 Hb_000125_180--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000125_180--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292586 2.74722 1.86171 2.14941 0.48279 0.434232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530892 0.436357 0.837181 5.08379 4.74957

CAGE analysis