Hb_011853_020

Information

Type -
Description -
Location Contig11853: 37791-39373
Sequence    

Annotation

kegg
ID rcu:RCOM_1730280
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative
nr
ID XP_002516767.1
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
swissprot
ID Q9HDV0
description Putative glutamine amidotransferase PB2B2.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB2B2.05 PE=3 SV=2
trembl
ID B9RSP8
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative OS=Ricinus communis GN=RCOM_1730280 PE=4 SV=1
Gene Ontology
ID GO:0016787
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011853_020 0.0 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
2 Hb_096027_010 0.0374157871 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_011618_110 0.067257264 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
4 Hb_001136_040 0.0736345029 - - amino acid transporter, putative [Ricinus communis]
5 Hb_000003_370 0.0766290906 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_001136_160 0.0783985469 - - catalytic, putative [Ricinus communis]
7 Hb_002636_120 0.0786307352 - - Protein bem46, putative [Ricinus communis]
8 Hb_001117_050 0.0906555176 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
9 Hb_005762_010 0.0908571235 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
10 Hb_000077_280 0.0915149782 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_004202_020 0.0916112199 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003339_010 0.091945897 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
13 Hb_008054_030 0.092522646 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
14 Hb_000230_300 0.0930649822 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
15 Hb_001766_130 0.0931248839 - - zinc finger protein, putative [Ricinus communis]
16 Hb_029977_030 0.095232326 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
17 Hb_000392_110 0.097164175 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_009783_010 0.0986749836 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
19 Hb_000012_350 0.099021335 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
20 Hb_059275_010 0.1021745967 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_011853_020 Hb_011853_020 Hb_096027_010 Hb_096027_010 Hb_011853_020--Hb_096027_010 Hb_011618_110 Hb_011618_110 Hb_011853_020--Hb_011618_110 Hb_001136_040 Hb_001136_040 Hb_011853_020--Hb_001136_040 Hb_000003_370 Hb_000003_370 Hb_011853_020--Hb_000003_370 Hb_001136_160 Hb_001136_160 Hb_011853_020--Hb_001136_160 Hb_002636_120 Hb_002636_120 Hb_011853_020--Hb_002636_120 Hb_029977_030 Hb_029977_030 Hb_096027_010--Hb_029977_030 Hb_096027_010--Hb_011618_110 Hb_001766_130 Hb_001766_130 Hb_096027_010--Hb_001766_130 Hb_096027_010--Hb_002636_120 Hb_000230_300 Hb_000230_300 Hb_096027_010--Hb_000230_300 Hb_011618_110--Hb_002636_120 Hb_011618_110--Hb_000003_370 Hb_004202_020 Hb_004202_020 Hb_011618_110--Hb_004202_020 Hb_001975_110 Hb_001975_110 Hb_011618_110--Hb_001975_110 Hb_007185_050 Hb_007185_050 Hb_001136_040--Hb_007185_050 Hb_001136_040--Hb_001136_160 Hb_009783_010 Hb_009783_010 Hb_001136_040--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_001136_040--Hb_001898_040 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280 Hb_000003_370--Hb_004202_020 Hb_000003_370--Hb_002636_120 Hb_000003_370--Hb_001136_160 Hb_004223_060 Hb_004223_060 Hb_000003_370--Hb_004223_060 Hb_001136_160--Hb_001898_040 Hb_001136_160--Hb_009783_010 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_012132_050 Hb_012132_050 Hb_001136_160--Hb_012132_050 Hb_002636_120--Hb_001975_110 Hb_026218_010 Hb_026218_010 Hb_002636_120--Hb_026218_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.336969 1.38607 2.62574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0118489 1.16832

CAGE analysis