Hb_011861_050

Information

Type -
Description -
Location Contig11861: 50016-55585
Sequence    

Annotation

kegg
ID rcu:RCOM_0902190
description prli-interacting factor l, putative
nr
ID XP_012073113.1
description PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q8IUF1
description COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
trembl
ID A0A067KYV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05522: 50055-55362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_050 0.0 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
2 Hb_000480_040 0.0669674321 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
3 Hb_000144_060 0.0714021622 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000345_370 0.0819135493 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_000309_020 0.0819463521 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
6 Hb_000941_100 0.0862424943 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
7 Hb_005147_080 0.0880282286 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000260_710 0.0897785895 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
9 Hb_001438_010 0.0912530939 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
10 Hb_000802_130 0.0914284198 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
11 Hb_001472_160 0.0928777269 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
12 Hb_010344_020 0.0934382352 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
13 Hb_001220_050 0.0943401524 - - DNA-damage-inducible protein f, putative [Ricinus communis]
14 Hb_002660_190 0.0946872565 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
15 Hb_002150_140 0.0961507435 - - PREDICTED: girdin-like [Jatropha curcas]
16 Hb_005276_010 0.0974721963 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
17 Hb_000613_120 0.0980408377 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_000108_020 0.0984544101 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
19 Hb_001660_120 0.0992343005 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
20 Hb_000363_060 0.0997029161 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011861_050 Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080 Hb_000480_040--Hb_000309_020 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020 Hb_000144_060--Hb_000345_370 Hb_000144_060--Hb_000309_020 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_002542_160 Hb_002542_160 Hb_000144_060--Hb_002542_160 Hb_002282_070 Hb_002282_070 Hb_000144_060--Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000345_370--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_000345_370--Hb_016461_030 Hb_000309_020--Hb_002542_160 Hb_000309_020--Hb_000220_210 Hb_000309_020--Hb_000085_070 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_002290_030 Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9102 21.8837 61.9407 30.4021 18.1052 28.4828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8187 19.692 22.7217 17.987 97.4555

CAGE analysis