Hb_011861_070

Information

Type -
Description -
Location Contig11861: 60893-72915
Sequence    

Annotation

kegg
ID rcu:RCOM_0902300
description F-box/LRR-repeat protein, putative
nr
ID XP_002517700.1
description F-box/LRR-repeat protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVD1
description F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_0902300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05523: 61474-61790 , PASA_asmbl_05524: 61791-62245 , PASA_asmbl_05525: 60999-63169 , PASA_asmbl_05526: 63384-63897 , PASA_asmbl_05527: 66828-67221 , PASA_asmbl_05528: 68734-69586 , PASA_asmbl_05530: 70780-72620 , PASA_asmbl_05531: 72627-73206
cDNA
(Sanger)
(ID:Location)		 013_L21.ab1: 71222-71909 , 029_C10.ab1: 61031-62866 , 043_F12.ab1: 60999-63169

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_070 0.0 - - F-box/LRR-repeat protein, putative [Ricinus communis]
2 Hb_010080_060 0.0964167094 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_003866_020 0.1071812551 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000078_100 0.1099512152 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
5 Hb_005635_010 0.1117384277 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
6 Hb_002725_070 0.1118208968 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
7 Hb_000227_380 0.1126885892 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
8 Hb_007416_310 0.1155470577 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
9 Hb_002235_320 0.1165377945 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
10 Hb_000239_070 0.1181148378 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_002820_040 0.1204388338 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002701_080 0.1215480502 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
13 Hb_015763_020 0.1217273409 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
14 Hb_002601_120 0.1227037873 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
15 Hb_001140_250 0.1228890781 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
16 Hb_000002_440 0.123174745 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_005295_040 0.1236570325 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
18 Hb_000814_090 0.1258856311 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000568_040 0.1263403362 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
20 Hb_000594_020 0.1271693767 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011861_070 Hb_011861_070 Hb_010080_060 Hb_010080_060 Hb_011861_070--Hb_010080_060 Hb_003866_020 Hb_003866_020 Hb_011861_070--Hb_003866_020 Hb_000078_100 Hb_000078_100 Hb_011861_070--Hb_000078_100 Hb_005635_010 Hb_005635_010 Hb_011861_070--Hb_005635_010 Hb_002725_070 Hb_002725_070 Hb_011861_070--Hb_002725_070 Hb_000227_380 Hb_000227_380 Hb_011861_070--Hb_000227_380 Hb_004310_050 Hb_004310_050 Hb_010080_060--Hb_004310_050 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_000002_440 Hb_000002_440 Hb_010080_060--Hb_000002_440 Hb_000997_090 Hb_000997_090 Hb_010080_060--Hb_000997_090 Hb_005122_080 Hb_005122_080 Hb_010080_060--Hb_005122_080 Hb_003866_020--Hb_000227_380 Hb_006588_050 Hb_006588_050 Hb_003866_020--Hb_006588_050 Hb_006816_300 Hb_006816_300 Hb_003866_020--Hb_006816_300 Hb_004899_070 Hb_004899_070 Hb_003866_020--Hb_004899_070 Hb_000239_070 Hb_000239_070 Hb_003866_020--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_003866_020--Hb_000340_160 Hb_000078_100--Hb_002725_070 Hb_117950_020 Hb_117950_020 Hb_000078_100--Hb_117950_020 Hb_002820_040 Hb_002820_040 Hb_000078_100--Hb_002820_040 Hb_004608_020 Hb_004608_020 Hb_000078_100--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000078_100--Hb_000631_150 Hb_000078_100--Hb_005635_010 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_005295_040 Hb_005295_040 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_002725_070--Hb_000814_090 Hb_002725_070--Hb_002820_040 Hb_002725_070--Hb_117950_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000227_380--Hb_000239_070 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1698 38.6781 6.9559 9.80101 58.0558 65.1283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.605 11.2791 19.7227 32.9006 4.6503

CAGE analysis