Hb_011861_120

Information

Type -
Description -
Location Contig11861: 114877-124879
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02330g
description nodulin family protein
nr
ID XP_012073100.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067KYU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06085 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein nuclear fusion defective 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05538: 115031-124808 , PASA_asmbl_05540: 116639-124799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_120 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
2 Hb_008790_020 0.1440236513 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
3 Hb_002236_050 0.154787621 - - -
4 Hb_025336_020 0.1561705431 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
5 Hb_001726_110 0.1611311468 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
6 Hb_049436_010 0.1620062581 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
7 Hb_000094_370 0.1621739171 - - -
8 Hb_112023_010 0.163193882 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
9 Hb_119494_010 0.1652558528 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
10 Hb_010407_170 0.1698699149 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
11 Hb_000318_200 0.1701362298 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
12 Hb_005489_140 0.1711666885 - - PREDICTED: maspardin [Jatropha curcas]
13 Hb_000002_270 0.1735857723 - - hypothetical protein VITISV_043897 [Vitis vinifera]
14 Hb_006111_080 0.1772635941 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
15 Hb_003253_050 0.1775099065 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
16 Hb_004586_350 0.1787568144 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
17 Hb_000905_170 0.1789975858 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
18 Hb_009732_020 0.1793689448 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
19 Hb_001828_020 0.1820501775 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
20 Hb_001019_050 0.1836810777 - - PREDICTED: importin-13 [Jatropha curcas]

Gene co-expression network

sample Hb_011861_120 Hb_011861_120 Hb_008790_020 Hb_008790_020 Hb_011861_120--Hb_008790_020 Hb_002236_050 Hb_002236_050 Hb_011861_120--Hb_002236_050 Hb_025336_020 Hb_025336_020 Hb_011861_120--Hb_025336_020 Hb_001726_110 Hb_001726_110 Hb_011861_120--Hb_001726_110 Hb_049436_010 Hb_049436_010 Hb_011861_120--Hb_049436_010 Hb_000094_370 Hb_000094_370 Hb_011861_120--Hb_000094_370 Hb_005489_140 Hb_005489_140 Hb_008790_020--Hb_005489_140 Hb_008790_020--Hb_001726_110 Hb_162150_010 Hb_162150_010 Hb_008790_020--Hb_162150_010 Hb_001019_050 Hb_001019_050 Hb_008790_020--Hb_001019_050 Hb_008790_020--Hb_025336_020 Hb_008790_020--Hb_049436_010 Hb_008948_120 Hb_008948_120 Hb_002236_050--Hb_008948_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_000402_210 Hb_000402_210 Hb_002236_050--Hb_000402_210 Hb_006970_080 Hb_006970_080 Hb_002236_050--Hb_006970_080 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010 Hb_000088_270 Hb_000088_270 Hb_025336_020--Hb_000088_270 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_012022_080 Hb_012022_080 Hb_025336_020--Hb_012022_080 Hb_025336_020--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_025336_020--Hb_000008_420 Hb_025336_020--Hb_005489_140 Hb_001726_110--Hb_005489_140 Hb_003038_140 Hb_003038_140 Hb_001726_110--Hb_003038_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_001031_090 Hb_001031_090 Hb_049436_010--Hb_001031_090 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000905_170 Hb_000905_170 Hb_049436_010--Hb_000905_170 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_000684_360 Hb_000684_360 Hb_000094_370--Hb_000684_360 Hb_012325_010 Hb_012325_010 Hb_000094_370--Hb_012325_010 Hb_000094_370--Hb_025336_020 Hb_003626_040 Hb_003626_040 Hb_000094_370--Hb_003626_040 Hb_001500_070 Hb_001500_070 Hb_000094_370--Hb_001500_070 Hb_000094_370--Hb_001019_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5362 11.8852 2.45812 6.6259 3.00476 4.75944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.1902 9.95995 1.3947 23.8673 4.35387

CAGE analysis