Hb_011872_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig11872: 30037-39518
Sequence    

Annotation

kegg
ID rcu:RCOM_1518720
description DNA binding protein, putative
nr
ID XP_012066251.1
description PREDICTED: transcription factor bHLH128 [Jatropha curcas]
swissprot
ID Q8H102
description Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1
trembl
ID A0A067L340
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23818 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh128

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05550: 30041-39423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011872_020 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
2 Hb_005016_010 0.1297236227 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_177215_030 0.1372609589 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
4 Hb_002170_020 0.1389626584 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
5 Hb_000258_050 0.1409830938 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
6 Hb_002660_120 0.1426003866 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
7 Hb_006816_480 0.1490690759 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
8 Hb_002615_030 0.151229473 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
9 Hb_180378_010 0.1579196743 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
10 Hb_001277_050 0.1637722497 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
11 Hb_000683_050 0.1643319671 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
12 Hb_007590_090 0.1649211288 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
13 Hb_001571_060 0.167609049 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
14 Hb_000181_460 0.1696895583 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
15 Hb_000861_100 0.1699636632 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
16 Hb_007229_050 0.1706720293 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
17 Hb_005015_110 0.1716572413 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
18 Hb_001123_150 0.1729699962 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
19 Hb_152868_030 0.1730141398 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_000110_300 0.1737098462 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]

Gene co-expression network

sample Hb_011872_020 Hb_011872_020 Hb_005016_010 Hb_005016_010 Hb_011872_020--Hb_005016_010 Hb_177215_030 Hb_177215_030 Hb_011872_020--Hb_177215_030 Hb_002170_020 Hb_002170_020 Hb_011872_020--Hb_002170_020 Hb_000258_050 Hb_000258_050 Hb_011872_020--Hb_000258_050 Hb_002660_120 Hb_002660_120 Hb_011872_020--Hb_002660_120 Hb_006816_480 Hb_006816_480 Hb_011872_020--Hb_006816_480 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_005016_010--Hb_000258_050 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_005016_010--Hb_177215_030 Hb_000548_070 Hb_000548_070 Hb_177215_030--Hb_000548_070 Hb_177215_030--Hb_180378_010 Hb_177215_030--Hb_002615_030 Hb_000638_130 Hb_000638_130 Hb_177215_030--Hb_000638_130 Hb_000181_460 Hb_000181_460 Hb_177215_030--Hb_000181_460 Hb_009535_030 Hb_009535_030 Hb_002170_020--Hb_009535_030 Hb_002170_020--Hb_005016_010 Hb_000683_050 Hb_000683_050 Hb_002170_020--Hb_000683_050 Hb_004030_060 Hb_004030_060 Hb_002170_020--Hb_004030_060 Hb_006683_020 Hb_006683_020 Hb_002170_020--Hb_006683_020 Hb_001473_170 Hb_001473_170 Hb_000258_050--Hb_001473_170 Hb_000258_050--Hb_001951_060 Hb_007313_040 Hb_007313_040 Hb_000258_050--Hb_007313_040 Hb_007537_030 Hb_007537_030 Hb_000258_050--Hb_007537_030 Hb_034083_020 Hb_034083_020 Hb_000258_050--Hb_034083_020 Hb_001975_040 Hb_001975_040 Hb_002660_120--Hb_001975_040 Hb_000092_120 Hb_000092_120 Hb_002660_120--Hb_000092_120 Hb_027654_080 Hb_027654_080 Hb_002660_120--Hb_027654_080 Hb_001975_030 Hb_001975_030 Hb_002660_120--Hb_001975_030 Hb_028707_070 Hb_028707_070 Hb_002660_120--Hb_028707_070 Hb_004837_150 Hb_004837_150 Hb_006816_480--Hb_004837_150 Hb_000331_510 Hb_000331_510 Hb_006816_480--Hb_000331_510 Hb_000110_300 Hb_000110_300 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_001123_150 Hb_001123_150 Hb_006816_480--Hb_001123_150 Hb_002046_060 Hb_002046_060 Hb_006816_480--Hb_002046_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67493 8.3058 5.16463 11.9057 0.45488 0.379679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90849 7.05118 4.11796 10.6277 9.72723

CAGE analysis