Hb_011909_030

Information

Type -
Description -
Location Contig11909: 28064-40632
Sequence    

Annotation

kegg
ID tcc:TCM_046867
description S-locus lectin protein kinase family protein, putative
nr
ID KDP38975.1
description hypothetical protein JCGZ_00732 [Jatropha curcas]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID A0A067L398
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00732 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05625: 16956-76135 , PASA_asmbl_05626: 16956-76135 , PASA_asmbl_05629: 40105-40671 , PASA_asmbl_05630: 38582-38697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_030 0.0 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
2 Hb_106969_010 0.09349283 - - Cytochrome P450 76C4 [Glycine soja]
3 Hb_046117_050 0.1040096976 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
4 Hb_000116_390 0.1070694307 - - Mlo protein [Hevea brasiliensis]
5 Hb_001953_130 0.1082464181 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
6 Hb_003376_340 0.1150076371 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000260_320 0.1244355144 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
8 Hb_000535_030 0.1289937485 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
9 Hb_135811_020 0.1315404505 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
10 Hb_007666_040 0.1324813764 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
11 Hb_003117_060 0.1326159889 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
12 Hb_000322_200 0.1327908493 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
13 Hb_000345_190 0.1346021007 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
14 Hb_003253_060 0.134780388 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
15 Hb_001838_010 0.1407574986 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
16 Hb_000031_130 0.1409632038 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
17 Hb_000265_010 0.1427000583 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000300_570 0.1431475769 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
19 Hb_012053_030 0.1442505295 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
20 Hb_018563_040 0.1484379972 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011909_030 Hb_011909_030 Hb_106969_010 Hb_106969_010 Hb_011909_030--Hb_106969_010 Hb_046117_050 Hb_046117_050 Hb_011909_030--Hb_046117_050 Hb_000116_390 Hb_000116_390 Hb_011909_030--Hb_000116_390 Hb_001953_130 Hb_001953_130 Hb_011909_030--Hb_001953_130 Hb_003376_340 Hb_003376_340 Hb_011909_030--Hb_003376_340 Hb_000260_320 Hb_000260_320 Hb_011909_030--Hb_000260_320 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_118777_010 Hb_118777_010 Hb_106969_010--Hb_118777_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_003117_060 Hb_003117_060 Hb_106969_010--Hb_003117_060 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_046117_050--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_003376_340 Hb_046117_050--Hb_000345_190 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080 Hb_000116_390--Hb_001953_130 Hb_000031_130 Hb_000031_130 Hb_000116_390--Hb_000031_130 Hb_001376_040 Hb_001376_040 Hb_000116_390--Hb_001376_040 Hb_001114_210 Hb_001114_210 Hb_000116_390--Hb_001114_210 Hb_008616_020 Hb_008616_020 Hb_000116_390--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000116_390--Hb_000185_060 Hb_003253_060 Hb_003253_060 Hb_001953_130--Hb_003253_060 Hb_001953_130--Hb_000031_130 Hb_001953_130--Hb_106969_010 Hb_012053_030 Hb_012053_030 Hb_001953_130--Hb_012053_030 Hb_003376_340--Hb_000532_060 Hb_003376_340--Hb_000345_190 Hb_047690_010 Hb_047690_010 Hb_003376_340--Hb_047690_010 Hb_150643_010 Hb_150643_010 Hb_003376_340--Hb_150643_010 Hb_000877_090 Hb_000877_090 Hb_000260_320--Hb_000877_090 Hb_012055_100 Hb_012055_100 Hb_000260_320--Hb_012055_100 Hb_000260_320--Hb_003376_340 Hb_000260_320--Hb_046117_050 Hb_000260_320--Hb_003253_060 Hb_000260_320--Hb_047690_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0728626 5.09348 0.140352 0.519532 0.00702413 0.0134392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0133762 0.0128779 3.43533 0.0718614

CAGE analysis