Hb_011909_040

Information

Type -
Description -
Location Contig11909: 44738-48651
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_667762
description hypothetical protein
nr
ID KDP38993.1
description hypothetical protein JCGZ_00750 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00750 PE=4 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein s6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_040 0.0 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
2 Hb_001488_100 0.1435367686 - - -
3 Hb_000340_430 0.1560994161 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002007_270 0.157897842 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
5 Hb_001999_060 0.157912867 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
6 Hb_000789_190 0.1601381084 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
7 Hb_000193_250 0.1626919938 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
8 Hb_002200_110 0.1652330515 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000417_180 0.1653046973 - - 60S ribosomal protein L11, putative [Ricinus communis]
10 Hb_007760_030 0.1691163732 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
11 Hb_000856_340 0.1693083957 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
12 Hb_026048_100 0.1698105103 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
13 Hb_000622_310 0.1701781005 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
14 Hb_000270_320 0.1705113056 - - hypothetical protein RCOM_1512920 [Ricinus communis]
15 Hb_011174_070 0.17071894 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
16 Hb_003638_030 0.1710108946 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
17 Hb_000056_100 0.1728085646 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
18 Hb_011218_060 0.1745838938 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
19 Hb_002301_320 0.1748513538 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
20 Hb_030620_010 0.1751157122 - - -

Gene co-expression network

sample Hb_011909_040 Hb_011909_040 Hb_001488_100 Hb_001488_100 Hb_011909_040--Hb_001488_100 Hb_000340_430 Hb_000340_430 Hb_011909_040--Hb_000340_430 Hb_002007_270 Hb_002007_270 Hb_011909_040--Hb_002007_270 Hb_001999_060 Hb_001999_060 Hb_011909_040--Hb_001999_060 Hb_000789_190 Hb_000789_190 Hb_011909_040--Hb_000789_190 Hb_000193_250 Hb_000193_250 Hb_011909_040--Hb_000193_250 Hb_002301_320 Hb_002301_320 Hb_001488_100--Hb_002301_320 Hb_003497_030 Hb_003497_030 Hb_001488_100--Hb_003497_030 Hb_002835_170 Hb_002835_170 Hb_001488_100--Hb_002835_170 Hb_011457_170 Hb_011457_170 Hb_001488_100--Hb_011457_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_001488_100--Hb_000340_430 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_004852_030 Hb_004852_030 Hb_002007_270--Hb_004852_030 Hb_001538_010 Hb_001538_010 Hb_002007_270--Hb_001538_010 Hb_026048_100 Hb_026048_100 Hb_002007_270--Hb_026048_100 Hb_000622_310 Hb_000622_310 Hb_002007_270--Hb_000622_310 Hb_003297_030 Hb_003297_030 Hb_002007_270--Hb_003297_030 Hb_000172_400 Hb_000172_400 Hb_002007_270--Hb_000172_400 Hb_002357_040 Hb_002357_040 Hb_001999_060--Hb_002357_040 Hb_002038_060 Hb_002038_060 Hb_001999_060--Hb_002038_060 Hb_003638_030 Hb_003638_030 Hb_001999_060--Hb_003638_030 Hb_001999_060--Hb_026048_100 Hb_000025_480 Hb_000025_480 Hb_001999_060--Hb_000025_480 Hb_103873_010 Hb_103873_010 Hb_001999_060--Hb_103873_010 Hb_002843_160 Hb_002843_160 Hb_000789_190--Hb_002843_160 Hb_000249_110 Hb_000249_110 Hb_000789_190--Hb_000249_110 Hb_014067_010 Hb_014067_010 Hb_000789_190--Hb_014067_010 Hb_002609_260 Hb_002609_260 Hb_000789_190--Hb_002609_260 Hb_000571_070 Hb_000571_070 Hb_000789_190--Hb_000571_070 Hb_000789_190--Hb_002835_170 Hb_152439_020 Hb_152439_020 Hb_000193_250--Hb_152439_020 Hb_004306_060 Hb_004306_060 Hb_000193_250--Hb_004306_060 Hb_001856_020 Hb_001856_020 Hb_000193_250--Hb_001856_020 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.339803 0.0590286 0.0579763 0.00838318 0.468521 0.33135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123008 0.367775 0.476139 0.0924825 0

CAGE analysis