Hb_011909_050

Information

Type -
Description -
Location Contig11909: 51112-51459
Sequence    

Annotation

kegg
ID rcu:RCOM_0209560
description ccd1, putative
nr
ID XP_012071184.1
description PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID A0A067L4E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00726 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein pbp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_050 0.0 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
2 Hb_009393_090 0.0771909023 - - acyltransferase, putative [Ricinus communis]
3 Hb_000718_060 0.0882929468 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
4 Hb_161103_010 0.0900756361 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_006651_030 0.0901494968 - - unnamed protein product [Homo sapiens]
6 Hb_008406_060 0.0922050842 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
7 Hb_001766_130 0.0986850839 - - zinc finger protein, putative [Ricinus communis]
8 Hb_003873_020 0.1004147592 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
9 Hb_001100_070 0.1049116799 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_003435_030 0.1074064445 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000818_090 0.1093925107 - - glutamate receptor 3 plant, putative [Ricinus communis]
12 Hb_000116_160 0.1098626476 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
13 Hb_127629_010 0.1104132104 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
14 Hb_008221_200 0.1121950408 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
15 Hb_003339_010 0.1137341851 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
16 Hb_001115_070 0.1146488633 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
17 Hb_001289_010 0.1156304778 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
18 Hb_000002_500 0.1175987648 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
19 Hb_000413_050 0.1181574069 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
20 Hb_132840_170 0.1192815826 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]

Gene co-expression network

sample Hb_011909_050 Hb_011909_050 Hb_009393_090 Hb_009393_090 Hb_011909_050--Hb_009393_090 Hb_000718_060 Hb_000718_060 Hb_011909_050--Hb_000718_060 Hb_161103_010 Hb_161103_010 Hb_011909_050--Hb_161103_010 Hb_006651_030 Hb_006651_030 Hb_011909_050--Hb_006651_030 Hb_008406_060 Hb_008406_060 Hb_011909_050--Hb_008406_060 Hb_001766_130 Hb_001766_130 Hb_011909_050--Hb_001766_130 Hb_009393_090--Hb_000718_060 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_001100_070 Hb_001100_070 Hb_009393_090--Hb_001100_070 Hb_008221_200 Hb_008221_200 Hb_009393_090--Hb_008221_200 Hb_007270_020 Hb_007270_020 Hb_009393_090--Hb_007270_020 Hb_000718_060--Hb_008221_200 Hb_000718_060--Hb_001100_070 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020 Hb_161103_010--Hb_008406_060 Hb_161103_010--Hb_006651_030 Hb_001477_060 Hb_001477_060 Hb_161103_010--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_161103_010--Hb_007357_010 Hb_000928_280 Hb_000928_280 Hb_161103_010--Hb_000928_280 Hb_029977_030 Hb_029977_030 Hb_006651_030--Hb_029977_030 Hb_008895_020 Hb_008895_020 Hb_006651_030--Hb_008895_020 Hb_006651_030--Hb_008406_060 Hb_006651_030--Hb_001766_130 Hb_000116_160 Hb_000116_160 Hb_008406_060--Hb_000116_160 Hb_008019_010 Hb_008019_010 Hb_008406_060--Hb_008019_010 Hb_018134_010 Hb_018134_010 Hb_008406_060--Hb_018134_010 Hb_096027_010 Hb_096027_010 Hb_001766_130--Hb_096027_010 Hb_005762_010 Hb_005762_010 Hb_001766_130--Hb_005762_010 Hb_003339_010 Hb_003339_010 Hb_001766_130--Hb_003339_010 Hb_185726_010 Hb_185726_010 Hb_001766_130--Hb_185726_010 Hb_012670_090 Hb_012670_090 Hb_001766_130--Hb_012670_090 Hb_000230_300 Hb_000230_300 Hb_001766_130--Hb_000230_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.06643 5.02854 5.48214 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0924297 5.19564

CAGE analysis