Hb_011909_100

Information

Type -
Description -
Location Contig11909: 90652-96868
Sequence    

Annotation

kegg
ID rcu:RCOM_1256170
description hypothetical protein
nr
ID XP_002525790.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F6H2F8
description tRNA (guanine(37)-N1)-methyltransferase 1 OS=Vitis vinifera GN=VIT_19s0014g03930 PE=3 SV=1
trembl
ID B9SIH1
description tRNA (guanine(37)-N1)-methyltransferase OS=Ricinus communis GN=RCOM_1256170 PE=3 SV=1
Gene Ontology
ID GO:0009019
description trna (guanine -n1)-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05638: 90756-96497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012675_050 0.0560381377 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001083_020 0.0776418131 - - -
4 Hb_001775_110 0.082752095 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
5 Hb_008554_070 0.0870646052 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
6 Hb_103118_010 0.0872768949 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
7 Hb_000962_040 0.0876277085 - - heat shock protein binding protein, putative [Ricinus communis]
8 Hb_004635_100 0.0881675762 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
9 Hb_009838_080 0.0889396262 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_024714_010 0.090077891 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
11 Hb_000928_210 0.0926585031 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
12 Hb_004724_340 0.0935886883 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
13 Hb_000680_140 0.0940943383 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
14 Hb_024185_020 0.0951315039 - - -
15 Hb_001268_420 0.0951770171 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
16 Hb_001898_160 0.0958583888 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
17 Hb_010080_090 0.0961293086 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
18 Hb_017225_020 0.0967790796 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
19 Hb_029879_130 0.0968553925 - - Derlin-2, putative [Ricinus communis]
20 Hb_004254_120 0.0970877261 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011909_100 Hb_011909_100 Hb_012675_050 Hb_012675_050 Hb_011909_100--Hb_012675_050 Hb_001083_020 Hb_001083_020 Hb_011909_100--Hb_001083_020 Hb_001775_110 Hb_001775_110 Hb_011909_100--Hb_001775_110 Hb_008554_070 Hb_008554_070 Hb_011909_100--Hb_008554_070 Hb_103118_010 Hb_103118_010 Hb_011909_100--Hb_103118_010 Hb_000962_040 Hb_000962_040 Hb_011909_100--Hb_000962_040 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_012675_050--Hb_000061_210 Hb_000046_050 Hb_000046_050 Hb_012675_050--Hb_000046_050 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020 Hb_001083_020--Hb_001775_110 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_012675_060 Hb_012675_060 Hb_001083_020--Hb_012675_060 Hb_001360_050 Hb_001360_050 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_000398_040 Hb_000398_040 Hb_001775_110--Hb_000398_040 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001775_110--Hb_001360_050 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020 Hb_024714_010 Hb_024714_010 Hb_008554_070--Hb_024714_010 Hb_002016_120 Hb_002016_120 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_001235_030 Hb_001235_030 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_103118_010--Hb_000061_210 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_103118_010--Hb_002408_020 Hb_103118_010--Hb_000046_050 Hb_004324_270 Hb_004324_270 Hb_000962_040--Hb_004324_270 Hb_000614_220 Hb_000614_220 Hb_000962_040--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_000962_040--Hb_027654_060 Hb_028486_030 Hb_028486_030 Hb_000962_040--Hb_028486_030 Hb_000853_190 Hb_000853_190 Hb_000962_040--Hb_000853_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18216 5.2509 7.39489 5.54387 10.5899 12.4001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5397 21.9769 20.6417 8.85757 14.6361

CAGE analysis