Hb_011909_120

Information

Type -
Description -
Location Contig11909: 100665-110814
Sequence    

Annotation

kegg
ID rcu:RCOM_1256040
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_002525787.1
description Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
swissprot
ID Q8L6Y1
description Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1
trembl
ID B9SIG8
description Ubiquitin carboxyl-terminal hydrolase OS=Ricinus communis GN=RCOM_1256040 PE=3 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin carboxyl-terminal hydrolase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_120 0.0 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
2 Hb_002461_060 0.0800391061 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
3 Hb_007423_040 0.0855742071 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
4 Hb_005730_120 0.08705513 - - PREDICTED: protein WHI4 [Jatropha curcas]
5 Hb_000126_010 0.0870774963 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
6 Hb_002217_510 0.0916781559 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001123_030 0.0937635939 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000487_210 0.0942948947 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
9 Hb_000005_220 0.095828121 - - DNA ligase 1, partial [Glycine soja]
10 Hb_000416_110 0.0974732041 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
11 Hb_004453_130 0.098188844 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
12 Hb_000010_110 0.0986741116 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
13 Hb_001357_150 0.1010692017 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
14 Hb_000522_150 0.1021359823 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
15 Hb_022181_030 0.1037822288 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
16 Hb_002445_100 0.1043113402 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
17 Hb_001214_060 0.1044039675 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
18 Hb_008225_090 0.1065909327 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
19 Hb_001599_040 0.1092949765 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
20 Hb_007885_060 0.1093359164 - - replication factor C 40 kDa family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_011909_120 Hb_011909_120 Hb_002461_060 Hb_002461_060 Hb_011909_120--Hb_002461_060 Hb_007423_040 Hb_007423_040 Hb_011909_120--Hb_007423_040 Hb_005730_120 Hb_005730_120 Hb_011909_120--Hb_005730_120 Hb_000126_010 Hb_000126_010 Hb_011909_120--Hb_000126_010 Hb_002217_510 Hb_002217_510 Hb_011909_120--Hb_002217_510 Hb_001123_030 Hb_001123_030 Hb_011909_120--Hb_001123_030 Hb_000462_170 Hb_000462_170 Hb_002461_060--Hb_000462_170 Hb_000487_210 Hb_000487_210 Hb_002461_060--Hb_000487_210 Hb_000340_400 Hb_000340_400 Hb_002461_060--Hb_000340_400 Hb_004450_040 Hb_004450_040 Hb_002461_060--Hb_004450_040 Hb_006520_040 Hb_006520_040 Hb_002461_060--Hb_006520_040 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_005271_220 Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_000005_220 Hb_000005_220 Hb_000126_010--Hb_000005_220 Hb_002374_010 Hb_002374_010 Hb_000126_010--Hb_002374_010 Hb_002445_100 Hb_002445_100 Hb_000126_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_000126_010--Hb_000163_220 Hb_063716_100 Hb_063716_100 Hb_000126_010--Hb_063716_100 Hb_000302_310 Hb_000302_310 Hb_000126_010--Hb_000302_310 Hb_000111_210 Hb_000111_210 Hb_002217_510--Hb_000111_210 Hb_002217_510--Hb_007423_040 Hb_000227_090 Hb_000227_090 Hb_002217_510--Hb_000227_090 Hb_008103_070 Hb_008103_070 Hb_002217_510--Hb_008103_070 Hb_000563_230 Hb_000563_230 Hb_002217_510--Hb_000563_230 Hb_001123_030--Hb_000302_310 Hb_000261_230 Hb_000261_230 Hb_001123_030--Hb_000261_230 Hb_001214_060 Hb_001214_060 Hb_001123_030--Hb_001214_060 Hb_001123_030--Hb_000126_010 Hb_022181_030 Hb_022181_030 Hb_001123_030--Hb_022181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.98528 2.91408 3.25994 2.66513 2.08575 2.72809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06093 3.8194 0.802227 2.68304 1.81635

CAGE analysis