Hb_011909_130

Information

Type transcription factor
Description TF Family: MYB
Location Contig11909: 113817-115402
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41920g
description putative MYB transcription factor family protein
nr
ID XP_011044525.1
description PREDICTED: transcription factor MYB86 [Populus euphratica]
swissprot
ID O49608
description Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1
trembl
ID A0A067L4D3
description MYB family protein OS=Jatropha curcas GN=JCGZ_00716 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_130 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
2 Hb_000484_050 0.0180238717 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
3 Hb_007658_030 0.0253614408 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
4 Hb_011639_130 0.0366042548 - - mads box protein, putative [Ricinus communis]
5 Hb_004829_050 0.0379971633 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
6 Hb_001403_100 0.0457571557 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
7 Hb_001104_260 0.0462047603 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
8 Hb_030593_010 0.0496604977 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
9 Hb_005204_030 0.0562405236 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
10 Hb_008078_040 0.0604148325 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
11 Hb_000756_040 0.0617759679 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_023827_010 0.0623222837 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
13 Hb_034558_010 0.0640178566 - - -
14 Hb_001766_090 0.0644076346 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
15 Hb_000764_060 0.0658332144 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
16 Hb_007676_070 0.0672920817 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
17 Hb_068447_010 0.0709727759 - - protein with unknown function [Ricinus communis]
18 Hb_009740_010 0.0784297638 - - receptor-kinase, putative [Ricinus communis]
19 Hb_128894_010 0.0796088344 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_011924_010 0.0835900436 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]

Gene co-expression network

sample Hb_011909_130 Hb_011909_130 Hb_000484_050 Hb_000484_050 Hb_011909_130--Hb_000484_050 Hb_007658_030 Hb_007658_030 Hb_011909_130--Hb_007658_030 Hb_011639_130 Hb_011639_130 Hb_011909_130--Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_011909_130--Hb_004829_050 Hb_001403_100 Hb_001403_100 Hb_011909_130--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_011909_130--Hb_001104_260 Hb_000484_050--Hb_007658_030 Hb_030593_010 Hb_030593_010 Hb_000484_050--Hb_030593_010 Hb_034558_010 Hb_034558_010 Hb_000484_050--Hb_034558_010 Hb_001766_090 Hb_001766_090 Hb_000484_050--Hb_001766_090 Hb_000484_050--Hb_011639_130 Hb_007658_030--Hb_034558_010 Hb_007658_030--Hb_030593_010 Hb_007658_030--Hb_001766_090 Hb_128894_010 Hb_128894_010 Hb_007658_030--Hb_128894_010 Hb_011639_130--Hb_004829_050 Hb_011639_130--Hb_001403_100 Hb_011639_130--Hb_001104_260 Hb_005204_030 Hb_005204_030 Hb_011639_130--Hb_005204_030 Hb_008078_040 Hb_008078_040 Hb_011639_130--Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_011639_130--Hb_000756_040 Hb_004829_050--Hb_001403_100 Hb_004829_050--Hb_001104_260 Hb_004829_050--Hb_005204_030 Hb_004829_050--Hb_008078_040 Hb_004829_050--Hb_000756_040 Hb_001403_100--Hb_001104_260 Hb_001403_100--Hb_005204_030 Hb_001403_100--Hb_008078_040 Hb_001403_100--Hb_000756_040 Hb_001104_260--Hb_005204_030 Hb_001104_260--Hb_008078_040 Hb_001104_260--Hb_000756_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.66519 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.168756 0

CAGE analysis