Hb_011915_020

Information

Type -
Description -
Location Contig11915: 17141-24117
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19960g
description prephenate dehydratase family protein
nr
ID XP_012076198.1
description PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SGD6
description Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1
trembl
ID A0A067KQ02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11258 PE=4 SV=1
Gene Ontology
ID GO:0004664
description arogenate dehydratase prephenate dehydratase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011915_020 0.0 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
2 Hb_001610_070 0.0796175846 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
3 Hb_002374_030 0.0966335752 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
4 Hb_029622_090 0.0985404928 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
5 Hb_001198_160 0.1038964733 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_010721_010 0.1047877683 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
7 Hb_002048_070 0.1082049724 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
8 Hb_138086_010 0.1084990951 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_008406_070 0.1089863724 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
10 Hb_000418_060 0.1092984698 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
11 Hb_000028_330 0.1102573839 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
12 Hb_001430_010 0.1110470548 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
13 Hb_023386_060 0.1129442463 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
14 Hb_028486_010 0.1165978869 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
15 Hb_001254_020 0.1173106116 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
16 Hb_001663_090 0.1184359137 - - ribonuclease t2, putative [Ricinus communis]
17 Hb_001247_160 0.1229130354 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
18 Hb_001019_020 0.1232877272 - - conserved hypothetical protein [Ricinus communis]
19 Hb_160653_010 0.1245308073 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_021576_160 0.1255448763 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_011915_020 Hb_011915_020 Hb_001610_070 Hb_001610_070 Hb_011915_020--Hb_001610_070 Hb_002374_030 Hb_002374_030 Hb_011915_020--Hb_002374_030 Hb_029622_090 Hb_029622_090 Hb_011915_020--Hb_029622_090 Hb_001198_160 Hb_001198_160 Hb_011915_020--Hb_001198_160 Hb_010721_010 Hb_010721_010 Hb_011915_020--Hb_010721_010 Hb_002048_070 Hb_002048_070 Hb_011915_020--Hb_002048_070 Hb_001610_070--Hb_001198_160 Hb_000028_330 Hb_000028_330 Hb_001610_070--Hb_000028_330 Hb_006736_040 Hb_006736_040 Hb_001610_070--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_001610_070--Hb_024650_010 Hb_000836_220 Hb_000836_220 Hb_001610_070--Hb_000836_220 Hb_001160_050 Hb_001160_050 Hb_002374_030--Hb_001160_050 Hb_189208_060 Hb_189208_060 Hb_002374_030--Hb_189208_060 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_000836_420 Hb_000836_420 Hb_002374_030--Hb_000836_420 Hb_001663_090 Hb_001663_090 Hb_029622_090--Hb_001663_090 Hb_029622_090--Hb_000028_330 Hb_029622_090--Hb_002048_070 Hb_021576_160 Hb_021576_160 Hb_029622_090--Hb_021576_160 Hb_004324_100 Hb_004324_100 Hb_029622_090--Hb_004324_100 Hb_001198_160--Hb_000028_330 Hb_001198_160--Hb_000836_220 Hb_177215_020 Hb_177215_020 Hb_001198_160--Hb_177215_020 Hb_138086_010 Hb_138086_010 Hb_001198_160--Hb_138086_010 Hb_000054_140 Hb_000054_140 Hb_001198_160--Hb_000054_140 Hb_023386_060 Hb_023386_060 Hb_010721_010--Hb_023386_060 Hb_010721_010--Hb_002048_070 Hb_001430_010 Hb_001430_010 Hb_010721_010--Hb_001430_010 Hb_002676_110 Hb_002676_110 Hb_010721_010--Hb_002676_110 Hb_010721_010--Hb_001663_090 Hb_002048_070--Hb_023386_060 Hb_000465_350 Hb_000465_350 Hb_002048_070--Hb_000465_350 Hb_002048_070--Hb_001663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.589455 284.635 294.109 276.148 2.33007 0.454598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157038 0.370715 0.759252 29.0256 56.05

CAGE analysis