Hb_011924_030

Information

Type -
Description -
Location Contig11924: 27342-29624
Sequence    

Annotation

kegg
ID rcu:RCOM_0206530
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002534592.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9T8M3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0206530 PE=4 SV=1
Gene Ontology
ID GO:0003824
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011924_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000871_020 0.075696127 - - receptor-kinase, putative [Ricinus communis]
3 Hb_000035_360 0.0791112575 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
4 Hb_000284_060 0.0804306414 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
5 Hb_003847_140 0.0843227068 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
6 Hb_000796_100 0.0864504689 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_009740_010 0.0867145772 - - receptor-kinase, putative [Ricinus communis]
8 Hb_008707_020 0.0875441517 - - ATP binding protein, putative [Ricinus communis]
9 Hb_039650_010 0.0875470903 - - cellulose synthase-like protein [Populus tomentosa]
10 Hb_023827_010 0.0900801145 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
11 Hb_064855_010 0.0955438875 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_005643_010 0.0958096681 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_066262_010 0.0991034154 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
14 Hb_001403_070 0.1003581284 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
15 Hb_000233_060 0.1006798926 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
16 Hb_030593_010 0.104685983 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
17 Hb_006452_140 0.1059505745 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
18 Hb_000879_100 0.1061791552 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_001331_050 0.1064343879 - - hypothetical protein VITISV_022439 [Vitis vinifera]
20 Hb_000277_020 0.1075583773 - - hypothetical protein JCGZ_08656 [Jatropha curcas]

Gene co-expression network

sample Hb_011924_030 Hb_011924_030 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_000035_360 Hb_000035_360 Hb_011924_030--Hb_000035_360 Hb_000284_060 Hb_000284_060 Hb_011924_030--Hb_000284_060 Hb_003847_140 Hb_003847_140 Hb_011924_030--Hb_003847_140 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_000871_020--Hb_009740_010 Hb_023827_010 Hb_023827_010 Hb_000871_020--Hb_023827_010 Hb_030593_010 Hb_030593_010 Hb_000871_020--Hb_030593_010 Hb_001766_090 Hb_001766_090 Hb_000871_020--Hb_001766_090 Hb_064855_010 Hb_064855_010 Hb_000871_020--Hb_064855_010 Hb_008707_020 Hb_008707_020 Hb_000035_360--Hb_008707_020 Hb_000233_060 Hb_000233_060 Hb_000035_360--Hb_000233_060 Hb_001376_020 Hb_001376_020 Hb_000035_360--Hb_001376_020 Hb_000035_360--Hb_000284_060 Hb_001331_050 Hb_001331_050 Hb_000035_360--Hb_001331_050 Hb_039650_010 Hb_039650_010 Hb_000284_060--Hb_039650_010 Hb_000284_060--Hb_008707_020 Hb_000284_060--Hb_000871_020 Hb_000284_060--Hb_000233_060 Hb_000656_360 Hb_000656_360 Hb_003847_140--Hb_000656_360 Hb_066262_010 Hb_066262_010 Hb_003847_140--Hb_066262_010 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_029866_140 Hb_029866_140 Hb_003847_140--Hb_029866_140 Hb_000796_100--Hb_064855_010 Hb_000844_020 Hb_000844_020 Hb_000796_100--Hb_000844_020 Hb_006452_140 Hb_006452_140 Hb_000796_100--Hb_006452_140 Hb_006616_050 Hb_006616_050 Hb_000796_100--Hb_006616_050 Hb_000796_100--Hb_023827_010 Hb_009740_010--Hb_023827_010 Hb_009740_010--Hb_030593_010 Hb_009740_010--Hb_001766_090 Hb_007658_030 Hb_007658_030 Hb_009740_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_009740_010--Hb_000484_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.25568 0.0333458 0.136403 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.631976 0.0422996

CAGE analysis